| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3309 |
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| Symbol | |
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| ID | 5540807 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 4318599 |
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| End bp | 4321301 |
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| Gene Length | 2703 bp |
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| Protein Length | 900 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640895427 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001433378 |
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| Protein GI | 156743249 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.269875 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.342346 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGTCAC GCATTCTGGT CGTCGATGAC CACGACTACA TTCGTCATCT CCTGGTGCGC
CTGCTCACGA GTCAGGGGCA TCAGACAAGC GTCGCTACGG GCGGGCGAGA AGCACTAGAC
CTGCTCTCGC AGCAGTCATT CGATCTGGTG CTGCTCGATC TGATGATGCC CGATATGAAC
GGCATCGAGG TGCTGGAGCA GTTGCGCCAG CAGAACGTTA TCTATCACAC GCCGGTTATC
GTCGTTTCTG GGGTGCACGA CCTGGATATG GTTGCTCAGT GCATCGAACT CGGCGCCGAC
GATTATCTGT TCAAACCGTT CAACGATGTG CTCTTGCGCG CGCGGGTGAA TGCCTCGCTC
GAGCGCAAGA TGCTGCGTGA TCACGAGCGC GCATACCTGG AGCGGCGCCT GCGCACCATC
GACCACGAAA CCTCCGATGA ACCGGCGATT GTGACCACTC CACCAGCGAC GATTGATATG
GCGCTGCTGA CGGCGCTCGA TGCGTTGGAG CGCTCGCAAC GCGAGCGCGA CCGCGTGGAA
GCAGAATTAC GCAGGCTGAA TGCCACGCTC GAAGAGCGAG TTGCCGAACG CAGCGCCGCT
GCTGAGCAAA GCGCCGCAGC GCTGCGCCAG CAGATGCTGA CGCAGCAATC GATCCTCGAC
AGCATCGGCG ATGCGATTGT TGTGATTGAC GGCGACGGTC GGCTGTTACA CGTCAATCCG
GCGGCACGCG ATCTGTTCGG CGACCGCGTC GTCGATCTGA CGCCCCAGGC TACGGCACGT
GCGTCTGTGC TGCTGCTTGC CGATGACACT TCCTGCCCGC CCGACACCCT GCCGCTGGCG
GTTGCGCTTC GTGGCGAGGC GCTCGATGGC GCCGAGTTTC TGCTGGCGTC ACCCGACTCC
GCCAAACGTT GGTTGAGCGT CACTGCCCGT CCACTGCGTG ACCTCGATGG AGCGATCAGT
GGCGCTGTAG CGGTGTTTCG CGACGTAACC ATAACGCGCC AGGCGGCTGA AGCGCTGCGC
GCCAGCGAAG AACGCTATGC GCTGGCGGCT CAGGCTGCCA ACGACGGTCT GTGGGATTGG
GATCTTACGA CGGGCAAGAT TTATTTTTCG CAACGCTGGA AAGCATCGAT TGGCTTCCAG
GACCACGAGA TCGGCAATGA TCCATCCGAA TGGTTCGATC GCGTCCACCC CGATGACCGC
GAGGGATTGG AGGTGCGTCT GGTTGCTCAT CTCCACCGCC TGATCTCCGG GTTCGAATAC
GAATATCGTA TGCGGCATCA CGATGGCGCC TACCGCTGGA TGAGTTGTCG TGGCATTGCC
GTATGGAATG CCGGCGGACA GGCAGTGCGG ATCGTTGGAT CGCAAACCGA CATCAACGCG
CGCAAACTGG TAGAGCAACG TCTGCTGCAC GAGGCATTGC ACGACAGCCT GACCGGACTC
GCCAACCGTT CGTGCTTTAT GGACCGATTG GAGCACGTCG TTGCGCGCAC CCGGCGCGGC
GCTTCATCCC CATTTGCGGT TCTCTTTCTC GACCTTGATC GGTTCAAACT CATTAATGAC
AGCCTCGGTC ACGTGGTTGG CGATCAATTG CTCATTGCCA TTGCGCGACG CCTCGAACGC
TGCCTGCGAC CTGGCGACAC GCTGGCGCGT CTCGGCGGTG ACGAGTTCGC CGTGCTCCTC
GAAGATTTGA GCGAACCACA GGCGGCGCTG ACGGTGGCGG AACGCATCCT GCGCCTGCTC
GAAGAACCGT TCCATCTCGC GGGACATGAG GTGTTCAGCA GCGCCAGCAT CGGTATTGCG
CTCAACGACA GCACGCGCTA TCATTCGCCT GCCGATGTGC TGCGCGACGC AGACACGGCA
ATGTACCACG CCAAGATGGA AGGACGATCA CGTTATGCCG TCTTTCACTC CGCAATGCAC
GACCGCGCCC GCCATCGCTT GCAGATTGAG ACCGATCTGC GCCGCGGCGT CGAACGCAAC
GAGTTTTTCG TCGTCTATCA ACCGATCGTC GAACTCAACA CACAGCAGAC CGTCGGGTTC
GAGGCATTGC TCCGCTGGCG GCATCCGCAC CGCGGTATCA TTAGTCCAAC CGAGTTCATC
GACGTGGCTG AAGAGACCGG CTTGATCGTC CCGATTGGTC AGATGGTGCT GCGCGAAGCA
TGTCGCCAAT TGAGCGAGTG GAGACAACGG CATCCGGCAC GAACGATCAC CATGCACATC
AATCTTTCAC CTCGCCAGAT CGCCGATCCG CACCTTGTCG ATGACACCAT CGCGTTGCTC
AACGCATACC ATCTCGATGC AGGCTCCCTT CACCTCGAAA TCACCGAGAC GGCGATCATC
GAACACGGTG ACATCGCCAG CCGGGCGCTG ATGCACCTGC GCTCTCTCGG AGCGCAGATT
TGCATCGATG ATTTTGGCGC CGGCTACTCG TCGCTCAGCT ATCTGCATCG CTTTCCTATC
GGGACGATCA AGATTGATCG CTCGTTTATC AGCCAGATTC ACCACAGCCA CGAAAATGCA
GAGATCGTTC GCACCATCAT TGCACTGGCG CATTCCCTGG GAATGACCGT CATCGCTGAA
GGCGCCGAAA CCGAGGAACA ACTGGCGCGC CTGCGTTCGA TGTCCTGCCC GTATGGGCAG
GGCTGGCTCT TCGCGCGAGC GCTTGAACCG GCGGCGGCTA CTGCTCTGCT CGATGCCGCA
TGA
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| Protein sequence | MPSRILVVDD HDYIRHLLVR LLTSQGHQTS VATGGREALD LLSQQSFDLV LLDLMMPDMN
GIEVLEQLRQ QNVIYHTPVI VVSGVHDLDM VAQCIELGAD DYLFKPFNDV LLRARVNASL
ERKMLRDHER AYLERRLRTI DHETSDEPAI VTTPPATIDM ALLTALDALE RSQRERDRVE
AELRRLNATL EERVAERSAA AEQSAAALRQ QMLTQQSILD SIGDAIVVID GDGRLLHVNP
AARDLFGDRV VDLTPQATAR ASVLLLADDT SCPPDTLPLA VALRGEALDG AEFLLASPDS
AKRWLSVTAR PLRDLDGAIS GAVAVFRDVT ITRQAAEALR ASEERYALAA QAANDGLWDW
DLTTGKIYFS QRWKASIGFQ DHEIGNDPSE WFDRVHPDDR EGLEVRLVAH LHRLISGFEY
EYRMRHHDGA YRWMSCRGIA VWNAGGQAVR IVGSQTDINA RKLVEQRLLH EALHDSLTGL
ANRSCFMDRL EHVVARTRRG ASSPFAVLFL DLDRFKLIND SLGHVVGDQL LIAIARRLER
CLRPGDTLAR LGGDEFAVLL EDLSEPQAAL TVAERILRLL EEPFHLAGHE VFSSASIGIA
LNDSTRYHSP ADVLRDADTA MYHAKMEGRS RYAVFHSAMH DRARHRLQIE TDLRRGVERN
EFFVVYQPIV ELNTQQTVGF EALLRWRHPH RGIISPTEFI DVAEETGLIV PIGQMVLREA
CRQLSEWRQR HPARTITMHI NLSPRQIADP HLVDDTIALL NAYHLDAGSL HLEITETAII
EHGDIASRAL MHLRSLGAQI CIDDFGAGYS SLSYLHRFPI GTIKIDRSFI SQIHHSHENA
EIVRTIIALA HSLGMTVIAE GAETEEQLAR LRSMSCPYGQ GWLFARALEP AAATALLDAA
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