Gene Rcas_3282 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3282 
Symbol 
ID5540780 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp4262763 
End bp4263875 
Gene Length1113 bp 
Protein Length370 aa 
Translation table11 
GC content60% 
IMG OID640895400 
Productnucleotidyl transferase 
Protein accessionYP_001433351 
Protein GI156743222 
COG category[J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1208] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.404178 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGCAG TCATTCTGGT CGGTGGTCTC GGCACCCGTC TGCGACCGCT GACGTGCAAC 
ACACCCAAGC CGATGATTCC GCTGGTCAAC CAGCCATTCA TCGTCCACGT GCTCGAAAAT
CTGCGCAACC AGGGGATCGA TGAAGTCATT CTGTGCGTGC AGTATCTCGC CGACCGGTTC
CGTGAGGCGC TCGGCGATGG TTCGGTATTG GGCTTGAAGA TTCACGTCAT CGAAGAGCCG
GAGCCGCTCG GCACCGCCGG CGCGGTGAAG AATGTCGAGC ATATGCTCGA TGGCTCGACA
TTCGTTTTCA ATGGCGATGT GTTGACCGAC CTCGACCTGC GGGCAATGCT GGCGTTCCAC
CGCGAACGCG GCAGCAAGTT GACCATTGCG CTGACGCCGG TTGAAGACCC AACCGCATAT
GGGCTGGTCG AAATGGACGA AACCGGTCAC ATCCGCCGCT TTATGGAAAA ACCGCGCGTC
GATGAGATCA CCTCGAACCT GATCAATGCC GGAACATACA TTATCGAACC AGAACTTTTC
CGCTATGTTC CCCCCAAACA GCACTATATG TTCGAGCGTG GGCTGTTCCC GGTGGTGCTG
CAAACGCGCG ATCCCATGTA CGGCTACCCC TCGCCAGCAT ATTGGACCGA CATTGGCACG
CCGTCGGCGT ACCTGGAGGT GCATCACGAT ATTCTGGTGG GGAAAGTGCG CTACCGCTTT
CACGGCAAAG AGATCGGCAA CCGCGTCTGG CTGGTTGGCG ATGCCGACAT TCACCCGCGC
GCTCAGGTGA TCGGTCCGGT CGTCATCGGT CCAGGGGTGA AAATCGGCGC CGGCGCGCAG
ATCATCGGTC CGACCGTCAT CGGCGCAGGA TGCGTCATCG GTGCGCAGGC ACGGATCGAG
GGCGCCGTCC TCTGGGAGAA CAATCAGATC GCCGAAGGTG TGGCGTTGCG ATCGTGTGTG
GTGGGCAGCC ACAACCAGAT CGGTGCGCGC ACCCACATCA CCGACGGCGC CGTCGTCGGC
GACTCGTGCA TCATCGAAGC GGACAATCGC CTGGAGCGCG GCATTCGCAT CTGGCCCGAA
ACCCACCTGA AAGAGCGTTC CATCTCCTTC TGA
 
Protein sequence
MKAVILVGGL GTRLRPLTCN TPKPMIPLVN QPFIVHVLEN LRNQGIDEVI LCVQYLADRF 
REALGDGSVL GLKIHVIEEP EPLGTAGAVK NVEHMLDGST FVFNGDVLTD LDLRAMLAFH
RERGSKLTIA LTPVEDPTAY GLVEMDETGH IRRFMEKPRV DEITSNLINA GTYIIEPELF
RYVPPKQHYM FERGLFPVVL QTRDPMYGYP SPAYWTDIGT PSAYLEVHHD ILVGKVRYRF
HGKEIGNRVW LVGDADIHPR AQVIGPVVIG PGVKIGAGAQ IIGPTVIGAG CVIGAQARIE
GAVLWENNQI AEGVALRSCV VGSHNQIGAR THITDGAVVG DSCIIEADNR LERGIRIWPE
THLKERSISF