Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3274 |
Symbol | |
ID | 5540772 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 4250336 |
End bp | 4251586 |
Gene Length | 1251 bp |
Protein Length | 416 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640895392 |
Product | TPR repeat-containing protein |
Protein accession | YP_001433343 |
Protein GI | 156743214 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.292319 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTCGGCG AGCCGCACTA TGACGAGGCG ATTGTACACT TTCAGCGTGG CCTGGTGCTT GAACAAGCGA ACCGCGTCGA AGAGGCGGTC GAAGAATATC GGCGCGCGTT AGAGCATAAC CCGCATCTCG CAGAGGCGCA TGATGCCCTT GGCAATTACT ACCATCGGCA TGGTCTGCTG GCAAAGGCAG CGGAAGAGTT TCGCATCGTT GCCAATCTGG AAGGCGGGTT TCTGGCATAC TTCAACATCG GTAGCATCCT TATCGAACTT GGCAGATACG ACGAGGCCAT CAATGCGCTG CTCCACTGTC TGATCTTTGA TGCCGAAGAC CCTGCGGTGC ATTATCAACT CGGGCTGGCG CACTTTCTGC ACGGTGATGA TTATGCGGCG CTCTACCATC TTCAGATGAC GCAGCAGCGC TATCCAAACG ACAGTAGCCT CCACCTGCTG ATTGGTCGCT GCCATTTGCG ACTGGGCGCA TACGATGATG CAGAGACGGC GTTTCACGTC GCTCTCCGTC ACGCTACACA CGACATTGAT CGGCTTCGCA TCCGAATGTA TCTTCAGGCA GTCGAACGCC ACCGTGAAAT TGGCGTGGTC CATTCGCTCA GAGAGCGTTT CTATGCTGAA CAGGGTGTTG CCTATCTTGG CTCGACCCAC GACGACGGAA ACAGAACAGA GGAATTTGCT GATTTCCACT TTACCTACCC CGACATTGCC ATCAGCCTCC ATCGCCTCAC CCGCCTTGCC AGATTGCAAC GCTGGCGTCT GACGTGTATC GTTCCGATTG ATCGCCTGGC TGAACCGCTG GCTCGCGCGC TGGCAGAATT GCTTCAGGTT CCGCTGCGCG GCGCTGATGC GCTGCAACCC GATGATATTG CCTTGCTGAC CCTCGCCATT GGTCACGAAG CCGAACTGTT GAAACTGGCG ATCGAACGGG CGCCGTGTGC ATCGGTCACG TTCTGTCTTG GGTTGGATTG GTTGCGCCAT AATGCCGTCG TCCCGGATGT GATCGGGGTC GTTGCACGCG ATATGTGCAG TGTGCCGTGG GAACCTGAGT TTCGTCGCCT CCGCGCGCAG GGTGCGCCTG TTGATCAACT GAATGCCTGT CTGAACCAGG CGACGCAGCA GATTGTCGCC GCCGTGCAAT CGACGCCCGC TCCGATCACG CCGCAGAGTC TGGCGTTCTT TCAAAAGTTC CGCCGCCTGC GGTATATCGA ACATGCCTGC GGCGCAACCA TCACCTGCTG A
|
Protein sequence | MLGEPHYDEA IVHFQRGLVL EQANRVEEAV EEYRRALEHN PHLAEAHDAL GNYYHRHGLL AKAAEEFRIV ANLEGGFLAY FNIGSILIEL GRYDEAINAL LHCLIFDAED PAVHYQLGLA HFLHGDDYAA LYHLQMTQQR YPNDSSLHLL IGRCHLRLGA YDDAETAFHV ALRHATHDID RLRIRMYLQA VERHREIGVV HSLRERFYAE QGVAYLGSTH DDGNRTEEFA DFHFTYPDIA ISLHRLTRLA RLQRWRLTCI VPIDRLAEPL ARALAELLQV PLRGADALQP DDIALLTLAI GHEAELLKLA IERAPCASVT FCLGLDWLRH NAVVPDVIGV VARDMCSVPW EPEFRRLRAQ GAPVDQLNAC LNQATQQIVA AVQSTPAPIT PQSLAFFQKF RRLRYIEHAC GATITC
|
| |