Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3273 |
Symbol | |
ID | 5540771 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 4248128 |
End bp | 4249939 |
Gene Length | 1812 bp |
Protein Length | 603 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640895391 |
Product | pepF/M3 family oligoendopeptidase |
Protein accession | YP_001433342 |
Protein GI | 156743213 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1164] Oligoendopeptidase F |
TIGRFAM ID | [TIGR02290] oligoendopeptidase, pepF/M3 family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.474589 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGCCT CCGTAAGCGA AACTCTTCCC CACTGGGATA TGACCGTCGT CTACCCCGCG CTCGATGCGC CAGAATTCAA CCGCGACCTT GTTGCAGTAC GCCAGGCATT CGATGATATG ACCGCGCTGT TTGATCGACT GGGCATTGAT CGGCGCGACG ATCAGGCAAC GGATAATACT GCGCTGGCGG CATTCGATAC CGTCATTGCA GCGTTGAACG ATCTGCTGGA ACGCTTTACC ACGCTGCGCG CCTATGTCTA CAGTTTCGTT GCAACGGATT CGCGCGATGA TCGGGCGCAG GCGGCGCTCA GCCTATTGAT GCAGGACAGC GTCAAACTAA CGAAACTGTC GAAACGGTTG ACGGCATGGA TCGGCGGACT GGATGCTGAG ACGCTGATTC AGCGCTCGGC GGTTGCGCGC GATCATGCGT ATCTGGTGCG ACGTGCCGTT GAAGAAGCCC GTCACCTGAT GTCGCCGGCG GAAGAGGAAC TTGCCGCAGA ACTCGATCTG TCGGGCGGGA TTGCCTGGAC GCGCCTGTAC CAGAATCTGA CGTCGCAGAT GATGGTCCCG ATTGAGCGCG ATGGGCAGGT AGTCGAACTG CCGATGAGTC AGGTGCGCAA CCTGGCGCGC GACCCCAGCC GCGAGGTGCG TCGCCATGCG CATGAAGCGG AACTTGCCGC CTGGGAACGC GCTGCACTGC CCATCGCGGC GGCGCTCAAC AGTATCAAAG GACAGGTGCT TGCGCTCGGT CGCCGGCGGT GCTGGGCAAC ACCCCTCGAC GCATCGCTGT TCGACAATGG AATCGACCGC GCCACGCTCG ATGCAATGAT GCATGCCTCG CGCGAGTTCT TCCCCGATTT TCGGCGCTAC CTGCGCGCCA AAGCACGGCT GCTCGGCGTC GAACGTCTCG CCTGGTACGA CCTGTTCGCG CCGGTCGGCG GCGGCGGACG CAGCTGGCAG TTCAGCGATG CTGAGGCATT TATCGTCGCC CAATTTGCGC GCTACTCGCC TCGTATGGGG GAGTTTGCGG CGCGAGCGTT TCGTGAGCGC TGGATCGATG CCGAACCACG TGCCGGAAAA GTTGGCGGTG CTTTCTGCAT GTCGCTCCGA CGTGATGAGT CGCGTATCCT GGTGAACCAC GACTCGACGG CGGATAGCAT GTTCACCCTG GCGCACGAAC TCGGTCATGC CTACCACAAT CTGAACCTGG CGCACCAGAC GATGCTCAAC CGTGATACGC CGATGACTCT GGCAGAAACG GCGAGCATTT TCTGTGAGAC GATTGTGCGC AATGCGGCTC TGCAAGAAGC AACCCGCGAT GAAACGCTTG AAATTCTTGA GGCGTTCCTC AGTGGCGCTT GCCAGGTGGT GGTCGATATT ACCTCGCGCT TCCTCTTTGA GACGGCGCTC TTCGAGCAGC GTGCCGCGCG CGACCTCTCG GTGGCGGAAT TGTGTACCAT GATGACCGAT GCGCAAAAGC AGACGTATGG CGATGTGCTC GATGAGCAGA CCTTGCATCC ATTTATGTGG GCTGTCAAGG GTCACTACTA CAGCAGTGGA TTCTCCTACT ACAACTATCC CTATATGTTC GGGTTGCTGT TTGGATTGGG GTTGTACGCC GAGTACCAAC GGGCGCCTGA AGCGTTTCAG GCGCATTACG ACGGCCTGCT GGCTTCGACC GGGCTGGCAA GCCCTCTCGA TCTGGCAGCG CGGTTGGGAT TTGATCTGCG CGCCCCTGCG TTCTGGCGTG CCAGCCTTGA GGTTGTTCGG AAAGATATTG ATCGCTTTGA GGCGCTGGTG GATGTGGTAT GA
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Protein sequence | MTASVSETLP HWDMTVVYPA LDAPEFNRDL VAVRQAFDDM TALFDRLGID RRDDQATDNT ALAAFDTVIA ALNDLLERFT TLRAYVYSFV ATDSRDDRAQ AALSLLMQDS VKLTKLSKRL TAWIGGLDAE TLIQRSAVAR DHAYLVRRAV EEARHLMSPA EEELAAELDL SGGIAWTRLY QNLTSQMMVP IERDGQVVEL PMSQVRNLAR DPSREVRRHA HEAELAAWER AALPIAAALN SIKGQVLALG RRRCWATPLD ASLFDNGIDR ATLDAMMHAS REFFPDFRRY LRAKARLLGV ERLAWYDLFA PVGGGGRSWQ FSDAEAFIVA QFARYSPRMG EFAARAFRER WIDAEPRAGK VGGAFCMSLR RDESRILVNH DSTADSMFTL AHELGHAYHN LNLAHQTMLN RDTPMTLAET ASIFCETIVR NAALQEATRD ETLEILEAFL SGACQVVVDI TSRFLFETAL FEQRAARDLS VAELCTMMTD AQKQTYGDVL DEQTLHPFMW AVKGHYYSSG FSYYNYPYMF GLLFGLGLYA EYQRAPEAFQ AHYDGLLAST GLASPLDLAA RLGFDLRAPA FWRASLEVVR KDIDRFEALV DVV
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