Gene Rcas_3255 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3255 
Symbol 
ID5540753 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp4229860 
End bp4230288 
Gene Length429 bp 
Protein Length142 aa 
Translation table11 
GC content59% 
IMG OID640895374 
ProductNusB antitermination factor 
Protein accessionYP_001433325 
Protein GI156743196 
COG category[K] Transcription 
COG ID[COG0781] Transcription termination factor 
TIGRFAM ID[TIGR01951] transcription antitermination factor NusB 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.489842 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTAGTC TGCGGCACCG AGTGCGCGCA ATTGCGCTCC AAATTCTGTT TGAACTCGAT 
GCAACCGACC ATCCGCCGGA TCAGGTAGTG GGGCGGCGCC TCGAGGAAGA GCAGCTGCCG
CCAGAAGGTG AGCGTTTTTT GCGACGATTG GTGTTCGGTG CATGGGAACA TGCGGCGCAC
CTCGACCGGA TTATCGAGGA GGCTGCGCCG AACTGGCCCG TCAGCCAGAT GCCGGGAGTG
GATAAGGCTA TTCTGCGGAT CGCCCTCTTC GAGGCTCTGA TCGACAAAGA GGAAAAGACA
CCGCTGAAGG CGATCATCAA CGAGGCGGTC GAACTTGCCA AGCAGTATGG CAGCGATAAT
TCGAGCCGCT TTGTCAACGG CGTTCTCGGC ACAGTCGTCA GTCGCTACCG CGAGCGGAGC
AAAGGGTAG
 
Protein sequence
MASLRHRVRA IALQILFELD ATDHPPDQVV GRRLEEEQLP PEGERFLRRL VFGAWEHAAH 
LDRIIEEAAP NWPVSQMPGV DKAILRIALF EALIDKEEKT PLKAIINEAV ELAKQYGSDN
SSRFVNGVLG TVVSRYRERS KG