| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3161 |
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| Symbol | |
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| ID | 5540659 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4101938 |
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| End bp | 4103983 |
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| Gene Length | 2046 bp |
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| Protein Length | 681 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640895282 |
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| Product | signal transduction histidine kinase, nitrogen specific, NtrB |
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| Protein accession | YP_001433233 |
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| Protein GI | 156743104 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3852] Signal transduction histidine kinase, nitrogen specific |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.805556 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGTATC ATAATAGTGT TATGACACAC GTGCGTCAAC GGATCTCCGC GTCTGAACCG
CGTCACACGC CTGAACCACT CCATGCGCAC ATCCATTTGC TCGAGGCGAT CGGTCAACCG
CTGGTCATTA CCGATCTGTC GGGCGTCATC GTGTACTGGA ACGCGGCTGC GGAGGCCGCC
TTTGGTTGGC GGTGGGAAGA GGTGTGTGGT CGTTCGGTGA TGGACATGTC GGACAGTGAA
CGATGGCGGC GCAAAGTAAC TCGCGCGCTC GACAGCGTAG CGCGGGAGGG TTGGTGGTAT
GGTGAGACGG TTGTTCAGCG TCGTGATGAC ACCAAGGCGC CGGTCCTCGT TCAGGCGCGT
CGTTGGTTCC GCAGCGAGAG CGAAGCGACG TTCATTGTTC TTCTTGTGAC CGATCTCAGT
TCTCAAAAGC GCATTGAAGA ACGGTTGCGT CGCCGTGTGG CAGTCCAGCG TCAGCAGACT
ATCGACCTCC AGCAACGTCT GAGACGGCAA CTGACCGATG TGCGCCTGGC AAACCACATG
TTGAGTAAAG AAATTGCCGA GCGTATCAGC GTTGAACAGA AACTACGCTT TCAGGCAATG
CTGCTCGATG CGGTCAGTCA GGCAGTGATT GCAACGAATC TGACAAGTGC GATTACGTAC
TGGAGCCGCT CGGCTGAGCG TATCTTCGGG TGGAGTGAAG CCGACATGAT CGGTCGTCAC
GTCTTCGACC TGGTAGCGGA GCCAAAGGAT AACGCGCAGA TCGCAGAAAT GCGCGCAACT
GTCGCTGCCG GTCACCCATG GGAGGGCGAG TTTACCCTGA CGCGGCGCGA TGGAACGATG
TTTCCTGCGT TCGTGACCGT GGCGGCGATC TATGATGAGC AGCAGCGTCG GAGCGGATCG
ATCGGCGTGA TCAGTGATAT CACCGATCGT AAACGTGATC GTGAAGCGCT GGCGAACGCC
AATGCGCGTC TTCAGGCGAT GAATGCCGAT CTTCAGTTGA GCCGCGATCT TTTGTACACG
ATTGTAGATA ATCTCGACGA TGCGCTGGCA TTGATCGATA ACAACGGTAT CATTCAGACA
ACCAATCGCC AATTTGCACG CCTCTTTGCC CGCCCACCCG ACACGCTTCC TGGCGCCTCG
TGCGATACGA TCTGTCCTGA GATTGCGCCA ATCGTCGCGC GTACCCTTGC CAGCGGTCTC
AAGGCATCGG GACGGGTGCA GCTGCGCCGT GCCTCAGGCG CCATGGCGAT TCTCGACATT
CACAGTATTC CCCTGAGCGA TGCCAACGAG GCGCGACGCG TGGTGTTGCG CCTGGTGGAT
GTCACCGAAC ATCTGCAACT TGAGGCGATT ATGCGCCAGA ATGAGCGCCT GGCGGCGAGC
AGTCGCCTGG CGGCGATTGT CGCGCACGAG ATTAACACCC CGTTGCAGTC GATCCAAAAC
TATCTGTACC TGTTACGCGC ACACGGCGCT GCGCAATCGG GGGAGTTTCT CGATCTGGTC
AGCGATGAGA TCTGTCGAGT TTCGGGGTTG CTACGGCGTC TGCTCGATCT CCATCGTCCC
GGCGATGGAG CGATTGAACT GATCGACTGT AATGCGCTGA TCGAGCGGGT ATTGTTGTTG
CTCGGCGGCA CACTGGCGGG CAGCGGCATC CGGGTGGAGC GATCCCTGAC AACACCTCTT
CCACCAGTGT CGGGAGGGCG CGACGCCCTG ACCCAGGTGT TGCTCAATCT GCTGATCAAC
GCGATTGATG CCATGCCGTG CGGCGGAACA TTGCGGATCG CAACGCGCCA TTCACTTGAA
ACTATCGATC AGTCGCCCGT TGCGTGCGTG CAAATAATGG TCGAAGATAC CGGACCAGGT
ATTATGCCCG ATCTGCAAGA ACGGATTTTT GATCCGTTCT TTACCACAAA GCCGCATGGA
TCAGGGTTAG GGTTGACGGT TAGTCGGCAA ATCGTCGAAC AGCACGGCGG GATGCTGCGG
CTTCAGAGCG GTTCGGGCGG CGGAGCGACA TTTATTGTCA CCCTCCCGGC AGCGGACAGA
TGGTAA
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| Protein sequence | MVYHNSVMTH VRQRISASEP RHTPEPLHAH IHLLEAIGQP LVITDLSGVI VYWNAAAEAA
FGWRWEEVCG RSVMDMSDSE RWRRKVTRAL DSVAREGWWY GETVVQRRDD TKAPVLVQAR
RWFRSESEAT FIVLLVTDLS SQKRIEERLR RRVAVQRQQT IDLQQRLRRQ LTDVRLANHM
LSKEIAERIS VEQKLRFQAM LLDAVSQAVI ATNLTSAITY WSRSAERIFG WSEADMIGRH
VFDLVAEPKD NAQIAEMRAT VAAGHPWEGE FTLTRRDGTM FPAFVTVAAI YDEQQRRSGS
IGVISDITDR KRDREALANA NARLQAMNAD LQLSRDLLYT IVDNLDDALA LIDNNGIIQT
TNRQFARLFA RPPDTLPGAS CDTICPEIAP IVARTLASGL KASGRVQLRR ASGAMAILDI
HSIPLSDANE ARRVVLRLVD VTEHLQLEAI MRQNERLAAS SRLAAIVAHE INTPLQSIQN
YLYLLRAHGA AQSGEFLDLV SDEICRVSGL LRRLLDLHRP GDGAIELIDC NALIERVLLL
LGGTLAGSGI RVERSLTTPL PPVSGGRDAL TQVLLNLLIN AIDAMPCGGT LRIATRHSLE
TIDQSPVACV QIMVEDTGPG IMPDLQERIF DPFFTTKPHG SGLGLTVSRQ IVEQHGGMLR
LQSGSGGGAT FIVTLPAADR W
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