| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3106 |
|---|
| Symbol | |
|---|
| ID | 5540602 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 4024369 |
|---|
| End bp | 4025517 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640895225 |
|---|
| Product | glycosyl transferase group 1 |
|---|
| Protein accession | YP_001433178 |
|---|
| Protein GI | 156743049 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0438] Glycosyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.277853 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGACAG ATTTGCCCGG GTACCCGCTG CGTGTCTTGC ACGTTCGTCC GCGTTTGGGA
ATCGGCGGTG CAACCGAGTA TCTCATCCGG CTGGCGGAGA GCCAGGCGAA CGCGGGGTAT
CACGTGGTGA TTGCGTCGGG AGGCGGCGAC TGGCTCAGGC GCATTGCAGG GTTTGCGCGC
TCCTATGATC GGCTGCCGCT GACGCCATAT CTTGGGTCCG GGAAGCGGAC GCCGAATCTT
CCGGGGTTAC TGGCATCGGG CCTCCAACTG GCGCGCATTA TTCGCGCCGA GCAGATCGAT
CTGGTCAATA CGCACCATCG CTTTGCGGCG CTGGCGGCCA GGCTGGCGTC GCGGCTGACC
GGCACGCCGG TCGTGACAAC GTTGCAAGAA GTGCCCTGGC GGAATCGCGG TCTGACACGA
TTTTCCCTGG GAACGCAGGC TATCACGATG AGTGCAATGA TGAAACGGTT CGTCATCGAC
GTGTGCGATA TTGCGCCGGA TCGGGTCACG GTGATTCCTA TCGGCATCGA CATCCCGGCG
CCGCTCTCCA TAGATCGTCG CCGCCAGTTG CTGGCGGAAC TGCGTCTCGA TGGCGCTGCG
CCGATCATCG TGAGCGTCGG GCGCTTGGTG TCGCGCAAAG GGCATATGTA TCTGATACGG
GCGTTGCCTG AGGTGATTCG GCGCTATCCC GACGTGCAGG TGGTGCTGGT GGGCGATGGC
GAGGAGCGCG CAACGCTCGA ACGAGAAGCG CAGGCGTTGG GTGTCGCCGA CAGGGTGACG
TTTGCCGGTG CGCGGAGCGA TGCGGTCGAT CTGATGGCGC TGGCTGATTT TACCGCGCTT
CCATCGCTCG AAGAAGAGTT TGGGATTGTC ATTACCGAGT CGTTTTCGTG CGGCAAGCCG
GTGGTGGCCA CCACAGTCGG CGGCATTCCC GAGCATGTGC GCTCGATGGA AAATGGCATA
CTCGTGCCGC CGCGCGACAG CCGCGCGCTG GCGGAGGCGA TCATCTTTTT GCTCGACCAT
CCGAATATGG TGCGTCAGTT TGGCGACTGC GCTCGGCGCA TGGTTGAGCA GCAGTATACC
CGGCAACGTT TTCTGGAACG CACAGAGGCG GTCTATCGCG CGGCGCAGAT GCGGGAGGTT
GGGCGATGA
|
|---|
| Protein sequence | MVTDLPGYPL RVLHVRPRLG IGGATEYLIR LAESQANAGY HVVIASGGGD WLRRIAGFAR
SYDRLPLTPY LGSGKRTPNL PGLLASGLQL ARIIRAEQID LVNTHHRFAA LAARLASRLT
GTPVVTTLQE VPWRNRGLTR FSLGTQAITM SAMMKRFVID VCDIAPDRVT VIPIGIDIPA
PLSIDRRRQL LAELRLDGAA PIIVSVGRLV SRKGHMYLIR ALPEVIRRYP DVQVVLVGDG
EERATLEREA QALGVADRVT FAGARSDAVD LMALADFTAL PSLEEEFGIV ITESFSCGKP
VVATTVGGIP EHVRSMENGI LVPPRDSRAL AEAIIFLLDH PNMVRQFGDC ARRMVEQQYT
RQRFLERTEA VYRAAQMREV GR
|
|---|
| |