| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3103 |
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| Symbol | |
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| ID | 5540599 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4020824 |
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| End bp | 4022320 |
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| Gene Length | 1497 bp |
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| Protein Length | 498 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640895222 |
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| Product | O-antigen polymerase |
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| Protein accession | YP_001433175 |
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| Protein GI | 156743046 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3307] Lipid A core - O-antigen ligase and related enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.313581 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACCTGG AACGTCTTCT CAAAAATCCG ATGGACGTTA CTGCCGGTCT CTGGCGACAC
GTCTGGTTTC AGGTCGGCGT GGTGGTGGCT GTTTCCATCG CCGCCGGAAT GCTGGTGTCG
CGCGACGTGC CGCTCTGGTT GTTCTTCGGC GGCATCGCGG GGATTGTTGT CGTTGCAATT
GCCTTTATCA AACCGGAGTA TGTCGCGGCG GCGCTGCTGG TGATCCACTG GGGAAACATC
CACGACGTGC TGATCAAGTA TCACGGCATT CCTTCGGTTG TGAAACTGAT GGTTGCCCTG
CTCACCGTGG TATTGCTGGC GCGGCGATTT CTTTCCGAGC GACCGCGCGG TCTGGTGTCC
GACCCGGTGA TCTGGTGGAT GCTGGCATAC CTGGTGGTCG GAGCGACAGG TCTGTGGTTT
GCGCGCGATA CCGACGCGGT GCTGAGTCGT CTCGTTGATA CGGCGAAGGA CGGTGTCATT
GCCGGGTTGA TCTTCAACCT GCTTTCGACA CGCGCAGCAT TCGAGCGCGC GGTGTGGGGT
TTGTTGATCG TGGGTGCCGT GTTGAGTGCG TTGACGGTCT ATCAGGAGAT GACCAAAACC
TACGACAACA ACTACTGGGG ATTCGCGCAG GCGGCGGTGC GCCAGATTTC GACGACCATG
GACGACCGCG CGCGTGCGTT TGGCACAGTG AACGATCCAA ACTATTTCGG GCAGTTGTTG
CTCGTGCTCG TGCCGCTGGC GGTGTGGGCC ATTCTGAACG GGCGGACCTG GCGAGGGAAA
TCGTTTGGGA TGGCGGCGTT GTTGCTGTTG CTCGCAGCGA TTGGGTTGAC CTTCTCGCGC
GGCGCGTATC TCGGTGCTGT GGTCGTGCTG GTCGTCTATG CGATGTACCT GCGACTCGAT
GCGCGTTATT TGCTGATCCT GCCGCTGATC GGCGCGCTGC TCTATGTTGC GCCGCCGGAG
TTCCGCGCGC GCTTTGGCAC GCTCGATGAA GTGTTGCCGG GCAACAATGC GGGCGCCTAT
GCCGATAGTT CGATTCAGGG GCGCTCGGTC AAGGCGGAGG TTGCGATTGC CATAGTGGCC
GACAATCCGA TCTTCGGCGT CGGGCGCGGA AACTATCGGT TGCACTACCG CGACTATATT
AACGAAATCG AGGGAGCCGG CTCGAATACT GAACGTGATG CGCATAATCT ATACCTGGAA
GTCGCTGCGG AACAGGGGAT TGTTGGTCTG GTCGTCTTCG TTGGGTTGCT GGCAACTGTA
TGGGGACGCT TGCGCGCAGC CGAACTCCTG TTCGTAGCGG CAGGCGAACG TCGTATGGCG
GACCTCTCGG TTGCGGTCAA GGTTGGGTTG CTGGGGTATC TGGTGACGTC GCTCTTTCTG
CACGGCGCGT ATGGCTATAT GCTCTGGCTC CAGGTCGGCA TGGCGGTTGC GCTGGTTGTT
ATTGCACAGC GAGAAGCAGC AGCGCACGCG GATCATGCGG TGAAAGCGAG CCGGTAA
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| Protein sequence | MYLERLLKNP MDVTAGLWRH VWFQVGVVVA VSIAAGMLVS RDVPLWLFFG GIAGIVVVAI
AFIKPEYVAA ALLVIHWGNI HDVLIKYHGI PSVVKLMVAL LTVVLLARRF LSERPRGLVS
DPVIWWMLAY LVVGATGLWF ARDTDAVLSR LVDTAKDGVI AGLIFNLLST RAAFERAVWG
LLIVGAVLSA LTVYQEMTKT YDNNYWGFAQ AAVRQISTTM DDRARAFGTV NDPNYFGQLL
LVLVPLAVWA ILNGRTWRGK SFGMAALLLL LAAIGLTFSR GAYLGAVVVL VVYAMYLRLD
ARYLLILPLI GALLYVAPPE FRARFGTLDE VLPGNNAGAY ADSSIQGRSV KAEVAIAIVA
DNPIFGVGRG NYRLHYRDYI NEIEGAGSNT ERDAHNLYLE VAAEQGIVGL VVFVGLLATV
WGRLRAAELL FVAAGERRMA DLSVAVKVGL LGYLVTSLFL HGAYGYMLWL QVGMAVALVV
IAQREAAAHA DHAVKASR
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