| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3064 |
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| Symbol | |
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| ID | 5540560 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 3966937 |
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| End bp | 3968571 |
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| Gene Length | 1635 bp |
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| Protein Length | 544 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640895183 |
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| Product | GAF sensor signal transduction histidine kinase |
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| Protein accession | YP_001433136 |
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| Protein GI | 156743007 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4585] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.980645 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCCAC TGCTCGTCGA TCAGCGTCAG TTGCAAACCC TGAGTCAACT TATTTCGGCT
GGGGGCCACC AGGATGTGCA TGAATTGCTT CAAGCGTCGC TGGAGCGATT GGTCGCCTTC
TGGCCCGCGC AGGGAGGTGC ATTGCTCTAC CATGCGCCCC ATGGCGAGGT CATTCGCCTG
CATCATGGGG TGATCGACAG CGAGGCTGGC GCACTGATCG CCGAGGCGCG CGAAACATTC
GCCCGCCGCG AAGAAGGGCG TGAACCAACC ATCGGCTACT ACACGCTCGA CGACGAACGC
AAATTGCTCG AACTTCCACT ATCGACCAGT TCACAGACCG TGGGTTTGCT CCATCTGGTC
GTGCTCGATG CCGAAACGGA GCGCCCGTCT CCCGCGCCCG ATGAGGACCT TGCCATGCTG
CTGGTGCGCG CCATTGGCGG AGAAGCCGAC AAACTGGCAC GCCTGCGACG CGCCGAGCAG
GACCTGCGCG AACTTCATCT GCTCTATCAG GTGGGGCAGG CGCTGGCGAG CAATCTCGAT
CTCTCCAGTC TGCTGAACGA TATTCGCAAC CAGGTTCCTC AGGCGATGGG CGCTGAGCGT
TGCTCGATCA TGCTGCTCGA TGAGCACACC CGTGAACTGA TCCTGGAACT GCCCGATCCG
CATACCGGTG AGCAGCGCGA GTTTCGCATC CCGCTTGATC GCGGCATTGC CGGTTGGGTG
GCCACCAATG GGATTGGCCA GATTGTCAAT GATGTCGAAC AAGACCCACG CTGGTTCGAT
GGAGTTGCGC GTGATGTCGA TTTTGAGACG CGCCAGATCC TCTGTGCGCC GATGCGTATC
GGCGATCGTG TCGTCGGCGT AATGCAGGTG CTCAACAAAC GTGATGGGAC GCCTTTCGAC
GACCAGGACC TGCGCCTTCT GACGACGCTG GCGACGCAGG CGGCGATTGC CGTCGAGAAT
GCGCGCCTGG TGCGCAGTCT GAAAGAGGAA CGTGACCGGT TGCTCGCCAA GGAAGCGGAG
GTACGCGCGG CGATTGCGCG CGACCTGCAC GATGGTCCGA CCCAGAGTAT TGCAGCGATT
GCGATGAATA TCGAGTTCAT CAAGAAATTG CTGCGTGCCA TGCCGGAACG AGTCGAAGGT
GAATTGGAAG TTCTCGCCGA ACTGGTGCAA AAAACCGCCT ACGATATTCG CACGCTCCTC
TTTGAACTGC GACCGCTCGG GCTGGAAACG CAAGGATTGC TATCGACGTT GCAGCAATAT
GTGGCCCGCT TCCGTGATCC TGCCGGTGTC ATGAAACTGC GCCTCGAGGC GCCTTCCAGC
ATTCCACGAT TGCCGGTCGA AGTGGAGGGC GCCATTTTCA TTATTATTCA GGAAGCAGTC
AATAATGCAC GCAAACATGC GCGCACCGAC GAAGTGGTGA TTTACCTGTA CCTGGAAGAA
GGGCAACTGG TTGCCAGTGT GCGGGATCGC GGACGCGGAT TCAACCTTGC TGCCGTTGAA
TCGAGTTACA ATACTCGCGG TTCGTTGGGT TTGCTGAATA TGCGCGAGCG CGCGCGCCTG
ATCGGCGGTG AGTGCCGCAT CCGCTCGGCG GAAGGCGAAG GTACGACGGT CGAATTGCGG
GTGCCGCTTG CCTGA
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| Protein sequence | MAPLLVDQRQ LQTLSQLISA GGHQDVHELL QASLERLVAF WPAQGGALLY HAPHGEVIRL
HHGVIDSEAG ALIAEARETF ARREEGREPT IGYYTLDDER KLLELPLSTS SQTVGLLHLV
VLDAETERPS PAPDEDLAML LVRAIGGEAD KLARLRRAEQ DLRELHLLYQ VGQALASNLD
LSSLLNDIRN QVPQAMGAER CSIMLLDEHT RELILELPDP HTGEQREFRI PLDRGIAGWV
ATNGIGQIVN DVEQDPRWFD GVARDVDFET RQILCAPMRI GDRVVGVMQV LNKRDGTPFD
DQDLRLLTTL ATQAAIAVEN ARLVRSLKEE RDRLLAKEAE VRAAIARDLH DGPTQSIAAI
AMNIEFIKKL LRAMPERVEG ELEVLAELVQ KTAYDIRTLL FELRPLGLET QGLLSTLQQY
VARFRDPAGV MKLRLEAPSS IPRLPVEVEG AIFIIIQEAV NNARKHARTD EVVIYLYLEE
GQLVASVRDR GRGFNLAAVE SSYNTRGSLG LLNMRERARL IGGECRIRSA EGEGTTVELR
VPLA
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