| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2987 |
|---|
| Symbol | |
|---|
| ID | 5540479 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 3873301 |
|---|
| End bp | 3874248 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640895105 |
|---|
| Product | band 7 protein |
|---|
| Protein accession | YP_001433062 |
|---|
| Protein GI | 156742933 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.168915 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00027326 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAGG GACAGGAAGG AAGAGCATTT CAGAATCCCG ATGCGCGAGG ACGGTCGGTA
TCGGCGCTGG TTGCGCTGAG TCTGATTGCG GTTGTCGCCA TTTTTCTCGT CAGCAATGCC
GTCACAACGA TTGAAGCCGG AACGCGCGGT GTGTTGAAGA CGTTTGGTGA GATTACCGGG
GTGCTTGAAG AGGGGCTGCA TTTCCGTATG CCGTTCATCA CGTCGGTGAC GGTAGTTGAG
GTGCGCACGC AGCGGTATGA GTCGAATTCG AGCGCGGCGT CGCGCGATTT GCAAACAGTG
ACGACCCAGG TAGTCATCAA CTATCGCCCT GACTCCGGCC AGGTTGATCG CCTGGTGCGC
GAGATCGGCG TCGATTATGA GCGGCGCGTG GTCGATCCGG CGATCCAGGA GGCGATCAAG
GCGGCGACGG CGCGCTTCAC TGCGGAGGAG TTAATCACCC GCCGTCCAGA GGTATCGGAT
CTGATCCAGC GTGGGTTGAG CGAACGGTTG ACGCCGCGCG GTGTGATTGT CGAGAGCGTG
TCGATCACCG ATTTCAACTT CAGCCCGGAG TTTGCGCGCG CTATCGAGGC GAAGCAGGTT
GCCGAGCAGG ATGCGCTGCG CGCTGCGCGT GAACTGGAGC GGGCGCGCAT CGAAGCGCAG
CAGCAGGTGG CGCGGGCGGA AGCCGAAGCG CGGGCGCGTT TGGAAATCGC GCGCGCTGAG
GCGGAGGCGT TACGCTTGCA GCGCGAGGTC ATTTCGGCGG AACTGCTGCA ACTGCGCTTC
ATCGAGCGCT GGGACGGCGT GATGCCGCGC TTCGTCGGTG GCGAGAATAG CCTTCTACCA
ATGTTGAACA TTCCGTCGAG CGAAGTGCTT GGCGATCGGG CGCCGGCGCC GCAACGCGCG
CCAGCCGAAG AACCGGCGCC GGCAGCCGAA CCTACGGCAT CACCGTAG
|
|---|
| Protein sequence | MSQGQEGRAF QNPDARGRSV SALVALSLIA VVAIFLVSNA VTTIEAGTRG VLKTFGEITG
VLEEGLHFRM PFITSVTVVE VRTQRYESNS SAASRDLQTV TTQVVINYRP DSGQVDRLVR
EIGVDYERRV VDPAIQEAIK AATARFTAEE LITRRPEVSD LIQRGLSERL TPRGVIVESV
SITDFNFSPE FARAIEAKQV AEQDALRAAR ELERARIEAQ QQVARAEAEA RARLEIARAE
AEALRLQREV ISAELLQLRF IERWDGVMPR FVGGENSLLP MLNIPSSEVL GDRAPAPQRA
PAEEPAPAAE PTASP
|
|---|
| |