| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2978 |
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| Symbol | |
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| ID | 5540470 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 3860978 |
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| End bp | 3862975 |
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| Gene Length | 1998 bp |
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| Protein Length | 665 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640895096 |
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| Product | excinuclease ABC, C subunit |
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| Protein accession | YP_001433053 |
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| Protein GI | 156742924 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0322] Nuclease subunit of the excinuclease complex |
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| TIGRFAM ID | [TIGR00194] excinuclease ABC, C subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000426335 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCCGATC TCATGCATAC GACGGTTGCC GATCCAATCG CCCTTGAAGA ACGGTTGCGC
GCCGTGCCGC TTGCGCCTGG GGTGTACCTC TGGAAGAACG CCCAGGGGAA AATTATTTAC
ATCGGTAAGA GCAAACGGCT GCGTGATCGT ATGCGTTCCT ACTTTGCCCG CACCGACGAT
CCTTACGGCA AAACGGCGCG GCTTGTGGCG CAGATCGCCG ATTTCCAGGT GATCGTGACG
TCCAACGAGC TTGAGGCGTT GCTGCTCGAA ATGACCCTGA TCAAGCAGCA CCGACCGCGC
TTCAACGTTT TACTGAAGGA CGACAAAAGC TACCCGTACA TCAAGGTGAC GCTGCACGAG
CCGTGGCCCC GCATTGTTGC GACGCGCAAC CCGCGTTGGG AAGAGGGGGC GCGCTACTTC
GGACCGTACT CCAGCGCCGG CGCCGTCTAT CGCACGCTCG ACCAACTCAA CCGGCTGTTC
GCCTTTCGCC CGCCGTCGCG TTGCCCTGAC GATAAGTTCA ACCGCCATCG GCGGCTCGGC
AAACCGTGCC TGTACTACGA CATCAAGCGG TGCCTGGGTC CGTGCGTGCC GGGTCTGGTC
AATCAGAACG ATTATCGCGC AACGGTTGAA TCGGTCTGTC GCTTCCTCGA AGGCAAGAGC
GACCTGGTGG CGAAAATATT GCGCCGTCAA ATGGAAGAAG CGGCGGAACG GCTCGACTTC
GAGCGCGCCG CGCGACTGCG CGACAGCATC CGCGACATTG AACTGATCGG TCAGCGGCAA
CAGGTGTTAC GCCACGATGA CGCCGACCAG GATGTCATTG GACTGGCGCG CGAGGAGGGG
ATGGCAGTTG TTCAGGTGCT CCGCATTCGC GCAGGAAAAT TGATCAGCGC CGAGTCGTTC
CCGTTGCAAA ATGCCGAAGG GGAACGTGAT GAATCTCTGC TGGCTTCGTT CCTGACGCAG
TTCTACGATG CTGCCGCCGA ACTTCCGGCG ACACTGCTGC TGCCTGCGCC ACTCGACGAC
CTGGCAATCA TCGAGCAATG GCTGGCGCAA AAAGCCGGGC GCAAAGTTGC GCTGCACACA
CCGCAACGTG GTGAAAAGCG CCGCCTCGTC GAACTTGCCG AGCAGAACGC TCGCCAGAAA
CTCGATGAAT TGCGTCTGCA ATGGCTCAAC AGCGAACAAC GCGCCGTGGC GGGGTTGACC
GAAGTGCGCG ATCTGCTCGG TTTGAGCGCA CTGCCGACAC GCATCGAGTG CTTCGATGTT
TCCAACACGC AGGGCAGCCA TTCGGTTGGG GCAATGGTCG TCTTTGAGCA TGGTGAACCG
AAGAAGAGCC GCTACCGCAA ATTCAGGATC AAAACCGTTG AGGGCGCGAA CGATGTCGCT
TCGATCCAGG AAGTGCTGCG GCGGCGTTTC CGGCGTGCTG CCATGGTCAT CGGCGAAGAG
GAACAACCGG CGGACGAGCG CGTTGTCAAC GGTCAGACCG ATGCCGCAGA GCAGGAAGAT
GGGGAGAAGA CCGATGCGCC GGGATCACAG TCCGACCTCG AACGCCAGGA GACCTGGGCT
GAACTGCCCG ACCTCATCCT GATCGACGGC GGCATTGGCC AGGTGAATGG CGCATTACAC
GTGCTGCGCG ACCTGTGCTT CGAGCATATT CCGGTCGTTG GAGTCGTCAA GGGTCCGAAC
CGTGACCGCT TCGATCTGCT GATCCCCGGC GCGAGCGATC TCATCGTTCT CGAGCGCGAG
AGCGCCGCGT TGCGTCTTAT CCGGCGGATT GACGAAGAAG CCGACCGTTT TGCGAAAGAT
TATCACCGCA AACTGCGCAG CAAATCGGCG ACCGCGTCGC GCCTGGAAGA GATCCCCGGC
ATCGGCCCGA AGCGGCGCCA GTTGCTGCTC AAACGCTTTG GCTCACTCGA CGGCATTCGC
AACGCAACCG TTGACGAAAT CGCCGCCGTA CCGGGCATGA CGCGCAAGGC GGCTGAGGAG
TTGAAGAGCC TGTTGTAG
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| Protein sequence | MSDLMHTTVA DPIALEERLR AVPLAPGVYL WKNAQGKIIY IGKSKRLRDR MRSYFARTDD
PYGKTARLVA QIADFQVIVT SNELEALLLE MTLIKQHRPR FNVLLKDDKS YPYIKVTLHE
PWPRIVATRN PRWEEGARYF GPYSSAGAVY RTLDQLNRLF AFRPPSRCPD DKFNRHRRLG
KPCLYYDIKR CLGPCVPGLV NQNDYRATVE SVCRFLEGKS DLVAKILRRQ MEEAAERLDF
ERAARLRDSI RDIELIGQRQ QVLRHDDADQ DVIGLAREEG MAVVQVLRIR AGKLISAESF
PLQNAEGERD ESLLASFLTQ FYDAAAELPA TLLLPAPLDD LAIIEQWLAQ KAGRKVALHT
PQRGEKRRLV ELAEQNARQK LDELRLQWLN SEQRAVAGLT EVRDLLGLSA LPTRIECFDV
SNTQGSHSVG AMVVFEHGEP KKSRYRKFRI KTVEGANDVA SIQEVLRRRF RRAAMVIGEE
EQPADERVVN GQTDAAEQED GEKTDAPGSQ SDLERQETWA ELPDLILIDG GIGQVNGALH
VLRDLCFEHI PVVGVVKGPN RDRFDLLIPG ASDLIVLERE SAALRLIRRI DEEADRFAKD
YHRKLRSKSA TASRLEEIPG IGPKRRQLLL KRFGSLDGIR NATVDEIAAV PGMTRKAAEE
LKSLL
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