| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2874 |
|---|
| Symbol | |
|---|
| ID | 5540363 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 3723455 |
|---|
| End bp | 3724693 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640894994 |
|---|
| Product | polymorphic outer membrane protein |
|---|
| Protein accession | YP_001432954 |
|---|
| Protein GI | 156742825 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01376] Chlamydial polymorphic outer membrane protein repeat |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.234984 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCCA GCCTCACTCT TCGTCTGCTC TCTACGTTGC TGCTGGCGGC GCTGCTTGCG
GCGCCGGGCG CGCGGCCGGC CTACGCGGCA GGGTATGTGG TCAACTCGCT GGCGGATAAC
ACCAGCAACG ACAGCCAGTG CACCCTGCGC GAAGCGATTC AAGAAGCCAA CAACGGCACG
GACACCGACT GCCCCGGCTC GCCGAGCAAC GCCAACGACA CCATCACCTT CAGCGTGAGC
GGGACGATTA CGCTCAGCTC GCCCCTGCCC GCCATCGTCT CTGGGCAGGG CGCGTTGACC
ATTGACGGCG GGGGCAGCAT CACCGTCAGC GGGAACAACA GCGTGCGGGT GATGGTCGTC
AACAGCGGCG CCGACCTCAC CCTGCGCAAC ATCACCATCG CCAACGGATC AAGCGGCTCC
GGCGGCGGCA TCTACAACGC CGGCACGCTG ACGGTGACCA ACAGCACCTT CTCCAGCAAC
AGCGCCATCT TCGGCGGCGG CATCTACAAC GCCAGCGGCG GCACACTGAC GGTGACCAAC
AGCACCTTCT CCAGCAACAG CGCCGACTTC GGCGGCGGCG GCGGCATTTA CAACGCCGGC
GGCGGCGCGC TGACGGTGAC CAACAGCACC TTCTCCAGCA ACAGCGCCGA CTCAGACGGC
GGCGGCGGCA TTTACAACGC CGGCGGCGGC GCGCTGACGG TGACCAACAG CACCTTCTCC
AACAACAGCG CCGACGGCGG CGGCGGCGGC ATCGCCAACG CCGGCACGCT GACGGTGACC
AACAGCACCT TCTCGGGCAG CAGCGCCAGC GGCCCCTTCG GCGGCGGCGG CATCCGCAAC
GCCGGCACGC TGACGCTCAA GAACACCCTC ATCGCCAACA GCACCAACGG GGATTGCACA
AATTTCGGAA CTGTCACCAC CGACTCCATC AACAACCTCA TCGAAAACAG CGGCAGCAAT
GCCTGCGGCC TGACGAACGG CACGAACGGC AACATCATCG GCTCCGACCC GGACCTCGGC
GCGCTGACCG GCTCCCCGGC CTACTTCCCG CTGCTGCCCG GCAGCCCGGC CATTGACAAA
GGCGATAACG CCACCTGCGC CGCCATGCCG GTCAACAACC AATCCCAAAA CGGCGTGACC
CGCCCGGTGG ATGGCGATAT GAACGGGGTG GCGGTCTGCG ACATTGGCGC GTATGAACGG
CCACTCGTCA AAGTCTACCT GCCCCTGATT GCGCGGTGA
|
|---|
| Protein sequence | MNASLTLRLL STLLLAALLA APGARPAYAA GYVVNSLADN TSNDSQCTLR EAIQEANNGT
DTDCPGSPSN ANDTITFSVS GTITLSSPLP AIVSGQGALT IDGGGSITVS GNNSVRVMVV
NSGADLTLRN ITIANGSSGS GGGIYNAGTL TVTNSTFSSN SAIFGGGIYN ASGGTLTVTN
STFSSNSADF GGGGGIYNAG GGALTVTNST FSSNSADSDG GGGIYNAGGG ALTVTNSTFS
NNSADGGGGG IANAGTLTVT NSTFSGSSAS GPFGGGGIRN AGTLTLKNTL IANSTNGDCT
NFGTVTTDSI NNLIENSGSN ACGLTNGTNG NIIGSDPDLG ALTGSPAYFP LLPGSPAIDK
GDNATCAAMP VNNQSQNGVT RPVDGDMNGV AVCDIGAYER PLVKVYLPLI AR
|
|---|
| |