Gene Rcas_2720 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2720 
Symbol 
ID5540206 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3509905 
End bp3511311 
Gene Length1407 bp 
Protein Length468 aa 
Translation table11 
GC content60% 
IMG OID640894846 
Productphosphomannomutase 
Protein accessionYP_001432809 
Protein GI156742680 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1109] Phosphomannomutase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGATGA CTATTCACCC GTCCATTTTT CGCGCATACG ACATCCGTGG CGTTGTTGAT 
CGCGATCTTT CCGAAGAGGT GTATCGGACG TTGGGACGCG CCGGCGGCAC GTTTTTCCGG
CAGCACAAGC GGCGCCGTAT TGTGGTAGCG CGTGATGCGC GCCTGACATC GCCAGGGTAT
GCTGCGGCGC TGATCGATGG GCTGCGCCGG AGCGGATGCG ATGTCGTTGA TATTGGCATG
GCGCCGACGC CGCTGATGTA TTTTGCCGTT TCCTTCCTGC GCGCCGACGG CGGCGCCGTT
GTGACGGCGA GCCATAATCC GCCACATTTC AATGGCTTAA AACTGCGGCT CTCCGATCCG
TTGTATGGCG GTACGCCGTT CAGCAGCGAT CAGATTCAAG AGGTGGGACG GATTGCCATG
AGCGGTTCGT TCGCTTCCGG GAATGGCGCA TATGAGCAGG TGGATGTGAC AGAAGAGTAT
GTGCGCGATG TGACCCGCCA TATTTCGCTC AAACGTAAGC CCAAGGTTGT GCTCGACGGC
GGGAACGGGG TCGCCGGTCC GCTCGGTATG CGCACGCTGG AAGCGATTGG CTGCGAGGTC
GTTCCCCTGT TTATCGAGCC TGATGGGACA TTTCCCCACC ATCATCCGGA TCCGCTCAAA
GAGGAGAATG TTCAGGACCT GATTCGCGTC GTGCGCGAGA CCGGCGCCGA GATGGGCATT
GGGCTCGACG GTGATGGCGA CCGCCTTGGT GTTGTCGATG GGAATGGTGA GATCGTCTTT
GCCGACCGCT ACCTGATCGT TCTGGCAAAA CAGGCGCTGG CACGCAGACC GGCGCCAATC
GTGTTTGATG TGAAGTGCAG TGTTGTGCTG ATCGATGCCA TCCGCGCCTT TGGGGGCACA
CCGGTGATGT GGAAGACCGG CTATTCAAAT CTGTCGGCGA AGATGCGCGA GGTGGGCGCG
CCGCTGGCGG GTGAGTTGAG CGGTCACGTC TTTGGCGCAG TCGAGCATCA TTTCCACGAC
GATGGCATCT TTGCCGGGTG TATGCTGCTC GATGCGCTGG AACAGAGTGG GCAGACGCTT
GTCGAGGCGC TGGCGCCGTT TCCGCCGTTG CCGGCGCTCT CGGAAGGTCG CCTGCCATAT
AACGAAGAGG CAAAGTTTCA GGCGATTGAC TTCGTGCGCG ACTACTTTGC GGCACGCTAC
CCGGTCGTTG ATGTTGACGG CGTGCGCGTC GACTTTGGCG ATGGTTGGGG GATTCTGCGC
GCGTCGAATA CTGAACCGGC AATCACGACT CGTTTTGAGG CACGCACCCT GGAGCGCGCT
TATGAGATCC GCGACATAAT GATCGGCAAG TTGCGCGAGT TTGTGCCAGC CCACAGCACC
GGTGGCGCTG GGTCTGGCGG CAGGTAA
 
Protein sequence
MMMTIHPSIF RAYDIRGVVD RDLSEEVYRT LGRAGGTFFR QHKRRRIVVA RDARLTSPGY 
AAALIDGLRR SGCDVVDIGM APTPLMYFAV SFLRADGGAV VTASHNPPHF NGLKLRLSDP
LYGGTPFSSD QIQEVGRIAM SGSFASGNGA YEQVDVTEEY VRDVTRHISL KRKPKVVLDG
GNGVAGPLGM RTLEAIGCEV VPLFIEPDGT FPHHHPDPLK EENVQDLIRV VRETGAEMGI
GLDGDGDRLG VVDGNGEIVF ADRYLIVLAK QALARRPAPI VFDVKCSVVL IDAIRAFGGT
PVMWKTGYSN LSAKMREVGA PLAGELSGHV FGAVEHHFHD DGIFAGCMLL DALEQSGQTL
VEALAPFPPL PALSEGRLPY NEEAKFQAID FVRDYFAARY PVVDVDGVRV DFGDGWGILR
ASNTEPAITT RFEARTLERA YEIRDIMIGK LREFVPAHST GGAGSGGR