Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2644 |
Symbol | |
ID | 5540126 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 3407373 |
End bp | 3409874 |
Gene Length | 2502 bp |
Protein Length | 833 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640894767 |
Product | Beta-mannosidase |
Protein accession | YP_001432734 |
Protein GI | 156742605 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0554464 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGCAGA TTGTGCTCTC CAGCGGCTGG CGGCTCCGAC AGTACGATCC ATCGCGCGAA TTCACCGCTC AGATCGACGA TGAGGAAGGA TGGATACCGG CGACAGTCCC CGGCGTCGTT CATCAGGACC TGATCGCTGC CGGGCTGCTG CCAGACCCGT TCGATGGGCT GAATGAATAC GCAGCGCAGT GGGTTGGCGA GGTTGCCTGG CTCTATCGGT GCGATTTCGA TGCGCCCGAC AATAGTGCGC CGGATGAGAC CGTAGTGCTG TGCTGCGACG GTCTCGACAC ATTTGCGACA GTCTGGCTCA ACGATGCGCC GGTGTTGACG AATGACAATA TGTTCGTTCC ACGCCGCGCC GAAGTGACCC GCCTGATCCG GCGAGGGCGC AATCGGCTCA TGATGCTCTT CGATTCGGCA CTGCGCCGTG GACGAGCGCG CGAAGCGGAG GACGGCGTTC TGCCAGTCTG GAACGGCGAT AGCAGCCGCC TGTATGTGCG CAAGGCGCAG TACCACTACG GCTGGGATTG GGGTCCCACG CTGTTAACCG CTGGTCCCTG GCGTCCGGTC CGTCTCGAGT TCTTTACAGC GCGCATCGCC GATGTCTCCT GCCCGGTCGA GGTCGATCCC GATCTGCACC ACGCGACAGT CGCTGTGCAG GTGGAGATCG AAGCGGGACA ACACACTGCG CGCAATACCG GGGAAATGAT GCGCTTCTTC GCCGGGCTGA CCGTTCAGGT CGAGCTGATC GATCCTGATG GCGCACCGGT TGCGACTGCC GCGCTGCCGG TCGAGGGAGG CAGCAGCGCA ACCAGACTGC ACGTGCCTGC ACCGCGTTTG TGGTGGCCCA ACGGCTATGG CGATCATCCA CTGTACCGAC TGGTTACCAC GCTCCACGAC AGCAACGGCG CGCTCGACCG GCGGGAACTG CGCATCGGGC TGCGACGGCT GCGTCTGGTG CAGGCGCCGC TCGATCACGA ACCCGGAACC ACATTCCTGT TTGAAGTCAA CAACATTCCT ATCTTTTGCG GCGGGGCGAA CTGGATTCCC GCCGACAGTT TCGTGACGCG CATTACCCCG GAAATGTATC GCGGCTGGTG TCAGCAGGCA GCGGCGGCCA ACATGGTCAT GCTGCGCGTC TGGGGCGGCG GCATCTACGA GGACGACACA TTCTACGACG CCTGCGACGA ATTGGGATTG CTGGTGTGGC AGGATTTCAT GTTTGCCTGC GGCATCTACC CTGCACCCGG ATGGTTTCGC GACAGTGTGC GCGCCGAGGC GGAGGCGCAG GTGCGGCGCC TGCGGCATCA CCCCTGCCTT GCGCTCTGGT GCGGCAACAA TGAAGATTAT CAGATTGCCG CCGCCACCGG GCGCTACGAT CCCAACCTTA CCCCGGAAGA GAATGCCGAC CGTTTCCCGG CGCGCCTGAT CTATGAGCGC CTGCTGCCCG ATATCTGTGC TGTCCTCGAT CCAACGCGCC CCTACTGGCC CGGCAGTCCC TACGGCGGCG CCGACGGATC GGATCAGACG TTTGGCGACC GACATACCTG GGATGTCTGG CATGGACGTG TCGCGCCTTA CCAGGAGTAT GTTGCCTACC ATGGTCGCTT CGTCAGTGAA TTCGGTATGC AGGCGTTCCC GGATCGCGCC ACAATCGAGG CGTTTGCGCC GCCTGCCGAA CGCTACCCGC AGAGTCGCAC CCTTGATCAT CACAACAAAG CAGCCGACGG TCCCCGCCGC CTGGCAGTCT ACCTGAGCGA CAATGTCCGC ATCCCGTCCG ATCTGGACGG GTACATCTAC GCCACGCAAC TGGTGCAGGC GGAGGCGCTG GCGATGGCAA TCCGCTCCTG GAGACGACGC TGGGGAGGAC CAGGACGCTA TGCAACGGCT GGCGCGCTGG TCTGGCAACT GAACGATTGC TGGCCCGTCA TCAGTTGGTC GTTGATCGAC TACTATCGGC GCGCTAAACC GGCGCTCTAT GCCGTGCGAC GCGCACTCGC GCCGATCGCT CCAGGGCTGG CGCGCACCGC CGATAGTGCC GAGTTGTGGG TGGTCAATGG AACGACCGCC GCCGCAGATG TCGATGTCGA ACTGCGCACA TGGACCCTCG GCGGCGATCT GGTGGTGCTC GACAAATTGC GTGTGTCACT CCTCCCCAAT CGCACCACCG AACTGGGACA GTTCGGCTTC GATCCGGGGT CAGCGCTGAT CTTCGATGCC CGTGTGATTA TGAACGATCA GGTCGTGGCG CGTGCCTCGC TCTGGCCCGA ACCGCTCAAG TATCTGACAT TGCCCGATCC CGTGATCGTC CTGGATCTGG CGTCTGATGA TGAGCTGCAC ATTCGCGCTG CTCGCCCTGC CAAGGGTGTG GTGCTCTTAG CCGGCGACGG CGTCGCCTGG AGCGACAATT ACCTCGATCT GATGCCCGGC GACGAGCAGG TGATCCGCGC CGACGGTCTG GGCGAGCGAC CGCTGAGCGT GCGCTGGCTC GGAATGGAAT AA
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Protein sequence | MRQIVLSSGW RLRQYDPSRE FTAQIDDEEG WIPATVPGVV HQDLIAAGLL PDPFDGLNEY AAQWVGEVAW LYRCDFDAPD NSAPDETVVL CCDGLDTFAT VWLNDAPVLT NDNMFVPRRA EVTRLIRRGR NRLMMLFDSA LRRGRAREAE DGVLPVWNGD SSRLYVRKAQ YHYGWDWGPT LLTAGPWRPV RLEFFTARIA DVSCPVEVDP DLHHATVAVQ VEIEAGQHTA RNTGEMMRFF AGLTVQVELI DPDGAPVATA ALPVEGGSSA TRLHVPAPRL WWPNGYGDHP LYRLVTTLHD SNGALDRREL RIGLRRLRLV QAPLDHEPGT TFLFEVNNIP IFCGGANWIP ADSFVTRITP EMYRGWCQQA AAANMVMLRV WGGGIYEDDT FYDACDELGL LVWQDFMFAC GIYPAPGWFR DSVRAEAEAQ VRRLRHHPCL ALWCGNNEDY QIAAATGRYD PNLTPEENAD RFPARLIYER LLPDICAVLD PTRPYWPGSP YGGADGSDQT FGDRHTWDVW HGRVAPYQEY VAYHGRFVSE FGMQAFPDRA TIEAFAPPAE RYPQSRTLDH HNKAADGPRR LAVYLSDNVR IPSDLDGYIY ATQLVQAEAL AMAIRSWRRR WGGPGRYATA GALVWQLNDC WPVISWSLID YYRRAKPALY AVRRALAPIA PGLARTADSA ELWVVNGTTA AADVDVELRT WTLGGDLVVL DKLRVSLLPN RTTELGQFGF DPGSALIFDA RVIMNDQVVA RASLWPEPLK YLTLPDPVIV LDLASDDELH IRAARPAKGV VLLAGDGVAW SDNYLDLMPG DEQVIRADGL GERPLSVRWL GME
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