Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2569 |
Symbol | |
ID | 5540051 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 3308790 |
End bp | 3309371 |
Gene Length | 582 bp |
Protein Length | 193 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640894698 |
Product | ECF subfamily RNA polymerase sigma-24 factor |
Protein accession | YP_001432665 |
Protein GI | 156742536 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGACGATG AGGCAACCCT GATCAACAGG CTGCGCCAGC GTGACCCGCA GGCGTTTGCC ACATTCTTTG AGACCTATGC CGACCGCGTC TACCGCCTGG CATACGGTAT TGTCGGCAGT GAAACCGATG CCGAGGAGGT GGTGCAGGCG ACATTCATTT CGGCGCTCGA AGCCATTGAG CGCTTTGAAC ATCATGCGCG TCTTGGCACC TGGCTCTATC GCATTGCCTA TAATCACGCG CTCATGATCC TGCGCCGACG GCGACCTGAA GAGACGCTGC CAGATGATGA CGGCGCGCTG CCGCTTCCAT CGGCTCTGAA AGACTGGAGC GTGTTGCCGG AGGAGCGCCT GCTCAGCCGC GAGGCGCAGG AAATGCTGCG GAAAGCGATC ATGGAACTGC CAACGACTCT GCGCGCAGCA TTCATCTGTC GTGACATTGA AGGTCTTTCA ACGGCTGACT GCGCACAGAT CATCGGCATT AGCGAGGGGG CGTTGAAGGT GCGCCTCCAT CGCGCGCGCC TGACGCTGCG TGAGCGGGTC AGTGAGTACT TCGGCGAGTG GGTGGCGCCG GGAAACGGCT GA
|
Protein sequence | MDDEATLINR LRQRDPQAFA TFFETYADRV YRLAYGIVGS ETDAEEVVQA TFISALEAIE RFEHHARLGT WLYRIAYNHA LMILRRRRPE ETLPDDDGAL PLPSALKDWS VLPEERLLSR EAQEMLRKAI MELPTTLRAA FICRDIEGLS TADCAQIIGI SEGALKVRLH RARLTLRERV SEYFGEWVAP GNG
|
| |