| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2526 |
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| Symbol | |
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| ID | 5540008 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 3258524 |
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| End bp | 3260209 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640894657 |
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| Product | signal peptide peptidase SppA, 36K type |
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| Protein accession | YP_001432624 |
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| Protein GI | 156742495 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00705] signal peptide peptidase SppA, 67K type
[TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0222519 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTATCCA TATTCTTCAT CTGGCTGATC AACCTGACGC GGCGCGTCCG CAACCTGTGG
CGGCGGTTGC TGCGGCGGCA GGTTGCATTT GTGCGCATCC CAATCGGTGG GGCGCTGCCA
GAGTTCGCGC CGGCGCCGCC GTGGTGGGCG CACCGCTTCT TTGGGGCAGC GGCGCCACCG
AGCCTCAGTG AGTTGCGTCG TCGCTTCGAG TGGTTGGCGT CTGACCCGCA AGTGAAAGGC
GTTGTGCTCG ACATTGGGAC TCTGACCTGT GGATGGGCGA CGATCCAGAA CCTGGATCAG
GACATCCGCA GGTTTCGCGA GCAGGGCAAA CTGGCTGTTG CGCGTATCAC AAACCCTGAC
ACAAAGACCT ATGTTGCAGC ATGCGCTGCC GATCTAATTG TGGCGCCGCC GGTGAGTTTA
CTGACCGTTA CCGGTCTGTA CGCCGAAGTG CGGTTTCTCA AAGATGCGCT GGCAAAAGTG
GATGTGAGCG TAGAAGTGAC GGCAGTGTCG CCGTACAAAA CGGCGGGCGA CTCGCTGGCG
TGCTCGGAAA TGTCGCCAGA AAACCGCGAG CAGATTGAAC GGCTGCTCGA TCAGCGTTAT
GCGTTGATCG TCGAGACCAT CGCCAACGCG CGACATAAGA CCGTCGATGA GGTGTGTTCG
CTCATCGATA CCGCACCGTG GAGCGCCCGG CGCGCCCAGG AAGCCGGTTT GATCGATGCC
GTGCTGTACG AGGACGAACT GCCCGCTTTT CTTGCATCAC GCACTGGCGC GTCTCCGGCA
AAACTGCCAG AGATCGCCGA ATGGAGTCAG GCGCGGCGCG CTCTGCGCCT CCCACTGTTG
CGCCACCATC GTCGTCTGGT CGGTGTTGTC GCTGTGGAAG GGACGATCGC GCCGGGAACC
AGCCGCCAGA TTCCGCTGCC GATCCCGCTG ATCGGTGGTC AAATCGCCGG AAGCGAGAGT
ATCGTGCAGG CGCTGCGTCA GGCAGAGCGC AATCCGCGTC TTGCTGCTGT GATTCTTTAT
GTCAACTCAC CCGGCGGCAG TGCGTTCGAC TCAGAACTGA TCTGGCGCGA AGTGCGGCGT
CTCGACCGGC GCAAGCCGGT GGTGGCGGTG ATGGGGGACG TCGCGGCTTC AGGCGGCTAC
TACGTCGCAT CCGGTGCGCG CACTATTCTG GCTCAACGTG GAACAATTAC CGGCAGCATT
GGCGTTCTGA TCGTCCGTCC GGTTATTGAC GGTCTCGTGA AGCGCGCTGG CGTGAACACC
GTCGCCATCG GGCGCGGCGC AAACAGCGCA TTCTTTATCA GCGATGCGCC AACTGAACAG
GAACGCGCGG CGGTGCGCGC ATTGATCGAC GACAGTTACA CCGTCTTCAA ACAGCGCGTG
ATGGAAGGGC GATCAATGTC CGAAGAGGCG CTTGAACCGC TGGCAGGCGG GCGCGTCTGG
ATGGGGGGAG AAGCGCATGA GTCCCATTTG ATCGATGACG TCGGCGGTAT GCCGGAGGCG
CTGTTGAAGG CGCAGGAACT CGCCGGACTG CCCCGCGATC AGACGGCGCC GCTGGTTCTG
ATCGGCGGCG GACGCGGACG CCTGGCGCCG CAGACATTCC CTGAAGAGCC ATCGAAGACG
TTGCGCGAGG CGCTGGCGCT TTTGCGTCAA CCGCTGATCT GGGCTATATT GCCGTTTTTT
GAATAG
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| Protein sequence | MVSIFFIWLI NLTRRVRNLW RRLLRRQVAF VRIPIGGALP EFAPAPPWWA HRFFGAAAPP
SLSELRRRFE WLASDPQVKG VVLDIGTLTC GWATIQNLDQ DIRRFREQGK LAVARITNPD
TKTYVAACAA DLIVAPPVSL LTVTGLYAEV RFLKDALAKV DVSVEVTAVS PYKTAGDSLA
CSEMSPENRE QIERLLDQRY ALIVETIANA RHKTVDEVCS LIDTAPWSAR RAQEAGLIDA
VLYEDELPAF LASRTGASPA KLPEIAEWSQ ARRALRLPLL RHHRRLVGVV AVEGTIAPGT
SRQIPLPIPL IGGQIAGSES IVQALRQAER NPRLAAVILY VNSPGGSAFD SELIWREVRR
LDRRKPVVAV MGDVAASGGY YVASGARTIL AQRGTITGSI GVLIVRPVID GLVKRAGVNT
VAIGRGANSA FFISDAPTEQ ERAAVRALID DSYTVFKQRV MEGRSMSEEA LEPLAGGRVW
MGGEAHESHL IDDVGGMPEA LLKAQELAGL PRDQTAPLVL IGGGRGRLAP QTFPEEPSKT
LREALALLRQ PLIWAILPFF E
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