Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2453 |
Symbol | |
ID | 5539934 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 3151635 |
End bp | 3152624 |
Gene Length | 990 bp |
Protein Length | 329 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640894583 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_001432551 |
Protein GI | 156742422 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.925084 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.312586 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTTCAGT ATATTGCGCG TCGCGTAGTG TTGATGATTC CAACCCTGTT TGTCATTTCG CTGATCTCGT TCGCCATCAT TCAACTGCCT CCCGGCGACT TCTTAAGCTC CTACGTAGCG CAACTGCGCA CTGAAGGCGA CGCAATCGAC GCTGCACAGT TAGCGGCGCT CGAAGAGCAA TACGGGTTGA ACCAACCCAT ATACATCCAA TACTGGAAGT GGATCAGCGG CATTTTACTG CGCGGCGATA TGGGACGGTC GTTCGAGTGG GGCAAGCCGG TAAGCGAGTT AATCTGGGAT CGGATCGGGA TCACCATGCT GATCTCGCTC CTGACCATCC TCCTGAGTTG GGCGATTGCC ATTCCGGCCG GCGTGTATGC CGCCACGCAC CGGTATTCCA TCCCCGATTA TCTGATGAGT TTCATCAGTT TTCTGGGGTT GGGCACACCG AGTTTCATGG TTGCGCTCAT TGCGCTGTGG GTCGGGCTGG CGTTCTTTGG GGTCAATATC AGCGGCTTGT TTTCCGATCA GTATCTCGAC GCGCCATGGA GCGTCGGCAA AGTGCTGGAT ATGCTATCGC GCATCTGGCT GCCGGTGATC GTCCTCGCTA TCGACAATAC AGCCAGTATC ATTCGCACGC TGCGCGCTAA TCTGCTGGAT GAACTCAACA AGCCCTATGT CGAAACGGCG CGCGCGAAGG GGGTGCGCGA GACGGTGCTG ATCTGGAAGT ATCCGGTGCG CGTGGCGCTC AACCCGTTCT TCAGCACCGT TGGCTGGACG CTTGCGGCGC TCGTTTCCGG CGAAACGCTG GTGGCGGTCG TGCTGAGTTA TCAGACGAGT GGACCGCTCC TGTTGCGCGC GTTGACCTCG CAGGACATGT ACCTTGCCGG GAGTTTCATT CTGCTACTCA GTACGCTGAC GGTCATCGGC ACGCTGATTT CGGACATTCT GCTCGCATGG GTTGATCCGC GCATCCGTCT GGAGGAGTAA
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Protein sequence | MLQYIARRVV LMIPTLFVIS LISFAIIQLP PGDFLSSYVA QLRTEGDAID AAQLAALEEQ YGLNQPIYIQ YWKWISGILL RGDMGRSFEW GKPVSELIWD RIGITMLISL LTILLSWAIA IPAGVYAATH RYSIPDYLMS FISFLGLGTP SFMVALIALW VGLAFFGVNI SGLFSDQYLD APWSVGKVLD MLSRIWLPVI VLAIDNTASI IRTLRANLLD ELNKPYVETA RAKGVRETVL IWKYPVRVAL NPFFSTVGWT LAALVSGETL VAVVLSYQTS GPLLLRALTS QDMYLAGSFI LLLSTLTVIG TLISDILLAW VDPRIRLEE
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