| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2422 |
|---|
| Symbol | |
|---|
| ID | 5539903 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 3115244 |
|---|
| End bp | 3116371 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640894552 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001432520 |
|---|
| Protein GI | 156742391 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACAG CCGCAGGTGA ACTGCCCAAA GTAGCAAAAG GCAAGAAGCA AGAAGATGTC
GGCCAGATTC CGCAGTGGAA ACTGATGGTG CGACGCTTCA GCCAGAGTAA GCTTTCGGTC
GGCGCTCTGA TCGTGCTCGG GTTTATGTAC ACGATCATGA TCCTCTCCGA TTTTATTGCG
CCGTATCCAC ACGATGTGCT CGACTCGAAT AATTCGTTCG CGCCACCGAC ACAGATTGTC
TGGGGGCCGG AAGGTCCGGG CATTTATGGA TTGAAGCAAG AACTGGACAT GGAGCGGTTC
CAGTGGATCT ATACGCCCGA CACGAGCGTG ATCTATCCGA TCCGCTTCTT CGTTCAGGGA
CATGAATACT CTTTTCTGGG TCTGTTCCCG TCGCGGTTGC ACCTGTTCGG CATCGAAGCG
CCGCCTGATT CGAATGCCAA AATCTTTCTC TGGGGAGCCG ATAAAGAAGG GCGCGATCTC
TTCTCGCGCA TTTTGAAAGG CTCGCAGGTC TCGCTGACGC TCGGTTTCTT TGGCGTCTTC
CTGTTTGTTG TGATCGGTTC GATCGTCGGG ACGGCATCGG GGTATTTTGG CGGTGCGCTC
GATAACCTCA TTCAGCGCCT GATCGAGTTG ATCCGGTCAT TCCCCGATCT GCCGCTCTAT
ATGGCGCTTG CCGCCGCCGT GCCGCTCAAT GTGCCGATCA CCGTGCGCTA TTTCATGATC
ACCATCGTGA TCGCTGTGAT CGGATGGACC GGTCTGGCGC GCGAGGTGCG CGGGAAGGTG
CTGGCGTTCC GCAGCGCGGA TTACACTGCT GCCGCTATTG CCGCAGGCGC GTCGCACTGG
CATGTGATCA CGCATCATCT GATTCCCAAC GCGATGAGCC ATATTGTAGT GGTCGGCATG
CTGGCAATCC CTGGCGCGAT TGGGCTGGAA ACGGCGCTGA GTTTCCTGGG GCTTGGCATT
CTGCCGCCGG CGGTCAGTTG GGGGATTCTG CTGCGTGATG CGCAGACGGT ACAGGCGGTT
GTGACCTACC CCTGGCTGTT GATTCCGGTG GCTCTGCTTA TCATTACGGT GCTGGCATTC
AATCTGCTCG GCGATGGCGT GCGCGATGCC GTCGATCCGT ATGCATAA
|
|---|
| Protein sequence | MATAAGELPK VAKGKKQEDV GQIPQWKLMV RRFSQSKLSV GALIVLGFMY TIMILSDFIA
PYPHDVLDSN NSFAPPTQIV WGPEGPGIYG LKQELDMERF QWIYTPDTSV IYPIRFFVQG
HEYSFLGLFP SRLHLFGIEA PPDSNAKIFL WGADKEGRDL FSRILKGSQV SLTLGFFGVF
LFVVIGSIVG TASGYFGGAL DNLIQRLIEL IRSFPDLPLY MALAAAVPLN VPITVRYFMI
TIVIAVIGWT GLAREVRGKV LAFRSADYTA AAIAAGASHW HVITHHLIPN AMSHIVVVGM
LAIPGAIGLE TALSFLGLGI LPPAVSWGIL LRDAQTVQAV VTYPWLLIPV ALLIITVLAF
NLLGDGVRDA VDPYA
|
|---|
| |