| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2388 |
|---|
| Symbol | |
|---|
| ID | 5539869 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 3076177 |
|---|
| End bp | 3077223 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640894520 |
|---|
| Product | NMT1/THI5-like domain-containing protein |
|---|
| Protein accession | YP_001432488 |
|---|
| Protein GI | 156742359 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.689816 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCATC GCCTGGTTAT CATACTGATG ATCATAGTTG CACTGGCGGC GGCTGGATGC
GGTGCAACGC CAGCCGCAAC GCCGACTATG CCGGCCGCTG CGCCGCCGCC AACCGAATCG
GCGACCCTGC GCCCAATAGT GATGGGATTC CCGTATATTC CGAATGTGCA ATTCGCCCAT
TTCTACCTGG CGGATGCGAA AGGGTACTAT GAAGCCGAAG GATTGGACGT CGCCTTCGAT
TACAATTTTG AGACCGATGT GGTGCAGCGC GTGGCGCAGG GAACATTGCA GTTCGCGCTG
GCGTCGGGCG ATTCGGTGCT GCTGGCGCGT TCGCAAGGTT TGCCGATTGT CACAGTGATG
ACGAATAGCC AGCGCTTCCC GACGGTGCTT TTCAGCAAAG CGGAAGCGAA CATCACTACG
CCAAAGGACC TGACGCGCGA CGGGGTGACG GTTGGCATTC CAGGGCGCTT CGGCGCCAGC
TGGATCGGTT TGCTGGCGTT GCTCTACGCT GAGAACATCC CGCGAGAAGC GGTCAACGTT
CAAGAGATCG GTTTCACGCA GGTGGCGGCG ATCACCGAGG GGAAAGTGAC GGTTGCAACC
GGGTACGGCA ACAACGAGCC GATTCAACTG GAGCGGCAGG GCATTCCGGT GAATGTCATC
CGTATCGCCG ATTATTTCCC GCTGGCATCC GACGGGCTGA TTACCGGTGA GCAACTCGTT
GCCGGCGATC CCGACGTGGT GCGCAAGTTC GTGCGGGCAA CCCTGCGTGG CATGGCGGAT
GTGATCGCCG ACCCTGACGC TGCATTCACC ACTGCTCTCG ATTACATCCC CGAACTCAAG
GGCGCCGATC AATCGACGCA GGACCTTCAG CGCGCCGTGC TCCAGGCGAC GCTCGACTAC
TGGCAGAGCG ACAAAACGAA GACCGAGGGG CTGGGGTTCT GCGATGAAAC GAACTGGCGC
GAAACCTACG TCTTCCTGCG TGAGAGCGGT CTGCTGGCGA CCGATGTGGA CGTAACGAAG
GCATTTACCA ATCAGTTCAT CAAGTAG
|
|---|
| Protein sequence | MMHRLVIILM IIVALAAAGC GATPAATPTM PAAAPPPTES ATLRPIVMGF PYIPNVQFAH
FYLADAKGYY EAEGLDVAFD YNFETDVVQR VAQGTLQFAL ASGDSVLLAR SQGLPIVTVM
TNSQRFPTVL FSKAEANITT PKDLTRDGVT VGIPGRFGAS WIGLLALLYA ENIPREAVNV
QEIGFTQVAA ITEGKVTVAT GYGNNEPIQL ERQGIPVNVI RIADYFPLAS DGLITGEQLV
AGDPDVVRKF VRATLRGMAD VIADPDAAFT TALDYIPELK GADQSTQDLQ RAVLQATLDY
WQSDKTKTEG LGFCDETNWR ETYVFLRESG LLATDVDVTK AFTNQFIK
|
|---|
| |