Gene Rcas_2314 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2314 
Symbol 
ID5539795 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand- 
Start bp2983185 
End bp2984195 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content61% 
IMG OID640894447 
Productglyceraldehyde-3-phosphate dehydrogenase, type I 
Protein accessionYP_001432415 
Protein GI156742286 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGTGC GAATTGGCAT CAACGGATTT GGACGGATCG GACGCCTGGC GTTGCGCGCC 
ATGTGGGGCT GGCCCGACAT CTCTGTCGCG CACATCAACG AGATCGGCGG TCCGGTCGAA 
ACCGCTGCGC ACCTGCTGGA GTTCGACTCG GTTCACGGGC GCTGGCAGCG CGATATTCAG 
GCCGAAAACG GGCGCCTGAT CGTCGATGGT GTGCCAATTG GCTACAGCAG CGTGAAGGAG 
CCGGGCGCCG TTCCCTGGCG CGCCGCCGGG GTCGACATTG TGCTCGAAGC CACCGGCAAG 
TTCCGCACCC GTGAGACGTT GCAGGCGTAT TTCGATGCGG GTGTGCGCAA GGTGATCGTC 
GCCGCGCCTG TCAAAGAGGG CGCGCTCAAT ATTGTCATGG GTGTGAACGA CCACTGGTAC 
AACCCTGACG AACACCATAT CCTCACCGCC GCGTCCTGTA CTACCAACTG TCTGGCGCCG 
GTCGTTAAGG TCATCCACGA GGGGATCGGG ATTGTGCATG GAATGATTAC GACCATTCAC 
GATATGACCA ACACCCAGAG CATTCTCGAT ACACCCCACA AAGACCTGCG CCGGGCGCGC 
GCGTCCAGTC TGTCGCTGAT TCCAACAACG ACCGGCTCGG CAACCGCCAT CGGGTTGATC 
TTCCCTGAAT TGCTCGGAAA ACTCGATGGC ATCGCCGTGC GGGTGCCATT GCTGAATGCG 
TCGCTCACCG ATTGTGTCTT CGAGGTGCAG CGCCCGACGA CCGTCGCCGA GGTGAATGCG 
CTGCTCCGCG CCGCCGCCGA TGGTCCGCTG GCGGGCATCC TGGGGTATGA ACATCGTCCG 
CTCGTCTCGG TCGATTTCAA GGACGATCCA CGCTCGGCGA TCATCGACGG ACCTTCGACA 
ATGGTCACAA ATGGCACACA GGTGAAGATT TTCGCCTGGT ACGACAACGA ATGGGGCTAC 
GCAAACCGGT ACGTCGAACT GGCGCGGAAG GTGGCGCTGG CGCTTACGTG A
 
Protein sequence
MSVRIGINGF GRIGRLALRA MWGWPDISVA HINEIGGPVE TAAHLLEFDS VHGRWQRDIQ 
AENGRLIVDG VPIGYSSVKE PGAVPWRAAG VDIVLEATGK FRTRETLQAY FDAGVRKVIV 
AAPVKEGALN IVMGVNDHWY NPDEHHILTA ASCTTNCLAP VVKVIHEGIG IVHGMITTIH 
DMTNTQSILD TPHKDLRRAR ASSLSLIPTT TGSATAIGLI FPELLGKLDG IAVRVPLLNA 
SLTDCVFEVQ RPTTVAEVNA LLRAAADGPL AGILGYEHRP LVSVDFKDDP RSAIIDGPST 
MVTNGTQVKI FAWYDNEWGY ANRYVELARK VALALT