Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2305 |
Symbol | |
ID | 5539786 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 2971655 |
End bp | 2973205 |
Gene Length | 1551 bp |
Protein Length | 516 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640894438 |
Product | putative delta-1-pyrroline-5-carboxylate dehydrogenase |
Protein accession | YP_001432406 |
Protein GI | 156742277 |
COG category | [C] Energy production and conversion |
COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
TIGRFAM ID | [TIGR01237] delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.639726 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGACCTCC CGCCATTTCG GAATGAACCA CCCACCGATT TCAACGATCC CGCCAATGTC GCCGCGATGG AGCAGGCGCT GGCGGATGTC CGCGCGCAGT TTGGGCGCGC TTATCCGATC ATTATCGACG GTGAGCGCAT CACCACCGGC GCGACGATTG CTTCCGTCAA CCCAGCGCGT CCTTCAGAGG TCGTTGGGTA TGCGGCGAGC GCCGATGTGA CGCTAGCGCA ACGCGCCATC GAAACGGCGC ACCGCCGCTT CGCCGAATGG CGGCGCGTCC CGGTCGAGCA GCGCGTCGAA CTGCTGTTGA AGGCGGCAGC CGCCATGCGC GCGCGTCGCT TCGAATTGAA CGCCTGGATT ATTTATGAGG TCAGCAAGAG TTGGGCGGAG GCGGATGCCG ATGTTGCCGA GGCGATCGAC TTCTGCGAGT TCTATGCGCG CGAAATGCTG CGCCTGAGCG AACCGCAACC GCTCTACCCC ATCCCCGGCG AAGATGACCG CCTGACCTAT ATTCCGCTCG GCGCCGGGGT CGCCATTCCG CCGTGGAACT TCCCGCTCGC TATTATGGTC GGGCTGGTGA CCGCGCCGGT CGTCGCCGGG AACACGATTG TGCTCAAGCC TGCCTCGACT TCGCCGATTA TTGCGGCGAA GTTTATGGAG ATCATGGAGG AGTGCGGCGT GCCTCCTGGC GTGGTCAATT ATCTTCCCGG TCCCGGCAGC AGCGTCGGCG ATACGCTGGT CGATCATCCG CTCACGCGCT TTATCGGTTT CACCGGATCG AAAGATGTTG GCATCCGCAT CTTTGAGCGC GCCGCAAAGG TGCATCCCGG TCAGAAATGG CTCAAGCGCA CCATTCTGGA GATGGGTGGC AAGGATACCA TCATTGTGGA CGAAACGGCG GACCTGGAAG CGGCTGCATC TGGGGTTGTC ACTTCCGCAT TCGGATTCCA GGGGCAGAAG TGCTCCGCCT GCTCGCGGGT CGTGGCGGTC GAGCCGGTCT ACGATGAACT GCTCGACCGG GTGATCGAAC TGACGGGCGG GTTGACGGTT GGCGATCCGG CGCAGCGCGG GACGTTCATG GGCGCGGTCA TCGACGAACG TTCGCGCGAG AAGATTCGCT GGTATATCGA GGAAGGCGTG CGCGAAGGGG GACGGCTGGC GTTCAGCGGC GATGCACCGG GTGACGGGTT CTTTGTGCCG CCCACGATCA TCGCCGATGT TGACCCCAAT GCGCGCATTT CCCAGGAGGA AATCTTTGGT CCGGTGCTGG CATTTATCAA GGCGCGCGAC TTCGATGAGG CGCTGGCGAT TGCCAACAAT ACCGAGTACG GTCTGACCGG CGGGGTCTAC TCGCGCTCGC GTGAGCGGTT GGAGCGTGCG CGCGACGAGT TCCACGTTGG CAATCTTTAT TTCAACCGCA AGATCACCGG CGCGATGGTC GGCGCGCATC CGTTTGGCGG CTTCAACATG TCGGGCACCG ACTCGAAGGC TGGCGGGCGC GATTATCTGC TCCTCTTCCT GCAAGCCAAG ACGGTAGCCG AGAAACTGTG A
|
Protein sequence | MDLPPFRNEP PTDFNDPANV AAMEQALADV RAQFGRAYPI IIDGERITTG ATIASVNPAR PSEVVGYAAS ADVTLAQRAI ETAHRRFAEW RRVPVEQRVE LLLKAAAAMR ARRFELNAWI IYEVSKSWAE ADADVAEAID FCEFYAREML RLSEPQPLYP IPGEDDRLTY IPLGAGVAIP PWNFPLAIMV GLVTAPVVAG NTIVLKPAST SPIIAAKFME IMEECGVPPG VVNYLPGPGS SVGDTLVDHP LTRFIGFTGS KDVGIRIFER AAKVHPGQKW LKRTILEMGG KDTIIVDETA DLEAAASGVV TSAFGFQGQK CSACSRVVAV EPVYDELLDR VIELTGGLTV GDPAQRGTFM GAVIDERSRE KIRWYIEEGV REGGRLAFSG DAPGDGFFVP PTIIADVDPN ARISQEEIFG PVLAFIKARD FDEALAIANN TEYGLTGGVY SRSRERLERA RDEFHVGNLY FNRKITGAMV GAHPFGGFNM SGTDSKAGGR DYLLLFLQAK TVAEKL
|
| |