| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2215 |
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| Symbol | |
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| ID | 5539696 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2861140 |
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| End bp | 2862177 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640894348 |
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| Product | isopentenyl pyrophosphate isomerase |
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| Protein accession | YP_001432316 |
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| Protein GI | 156742187 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1304] L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases |
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| TIGRFAM ID | [TIGR02151] isopentenyl-diphosphate delta-isomerase, type 2 |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000661916 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCGAAT CTGAACAAAC GAGCAGTCGC AAGCTCGATC ACGTGCGCAT TGTGTTAGGT
GAGGACGTCG CCGCCAAAGG AGTGACGACC GGTTTCGCCG CCTATCGCAT GCCACACGAA
GCGGCGCCAG AACTCGACCT CGCCGAAATC GATACCGGTT TGACCTTTCT CGGCAAGCGT
ATGCGCGCGC CGTTGCTCAT CAGTTCGATG ACCGGCGGCG CGCGCGATGT GGCGCGCATC
AATCTGGCGC TCGCCGAAGC CGCTGAGACG CTGGGGCTGG CAATGGGGGT TGGATCGCAG
CGCGCTGCGC TGGTTGATCC GCGCGTGGCG GAGACCTATC GGGTTCGGCA TGTCGCGCCA
ACAATTCCGC TCCTGGCGAA CCTTGGCGCA GTGCAGCTCA ACTATGGTTT TGGCGTCGAT
GAGTGCCGCC GCGCGGTCGA GATGATCGAG GCAGATGCGC TGGTGTTGCA CTTCAACGCG
CTCCAGGAAG CCGTCCAGCC GGAAGGAAAC ACGAACTTCA AGGGGCTGTT GCGCCGGATC
GAAGAAGTGT GCACCCGCCT CGACGTTCCG GTGATCGTCA AGGAAGTCGG CAACGGCATT
GGCGCCGCTA CTGCCCGTCG TCTGGTCGAT GCGGGTGTTA AGGTTATCGA CGTTGCCGGC
GCAGGCGGCA CCAGCTGGAG CGAAGTCGAA CGTTTCCGCC ATAAAACCGA ACGCGGCGCG
CAGGTGGCGG CAGCATTCGC CGGGTGGGGC ATTCCCACCA CCGAAGCCAT CCGTCAGGTG
CGCGCCGCAC TGCCCGACAT CACGATCATC GGGAGCGGCG GTGTGCGCAG CGGGGTGGAT
GTGGCAAAGG CTATCGCGCT TGGCGCCGAT CTGGCCGCTA CCGCGAAACC GGCGCTCATT
CCGGCAGTCG ATGAACGCGG CGCAGAGGCG GTTATCGAGA GTTTGCAGGT CTATATCGAT
GAATTGCGCA TTGCGATGTT CTGCACCGGT TGCGGCGATC TGGCGGCGCT TCGGCGACTG
CAACTCGAAC GGATTTGA
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| Protein sequence | MSESEQTSSR KLDHVRIVLG EDVAAKGVTT GFAAYRMPHE AAPELDLAEI DTGLTFLGKR
MRAPLLISSM TGGARDVARI NLALAEAAET LGLAMGVGSQ RAALVDPRVA ETYRVRHVAP
TIPLLANLGA VQLNYGFGVD ECRRAVEMIE ADALVLHFNA LQEAVQPEGN TNFKGLLRRI
EEVCTRLDVP VIVKEVGNGI GAATARRLVD AGVKVIDVAG AGGTSWSEVE RFRHKTERGA
QVAAAFAGWG IPTTEAIRQV RAALPDITII GSGGVRSGVD VAKAIALGAD LAATAKPALI
PAVDERGAEA VIESLQVYID ELRIAMFCTG CGDLAALRRL QLERI
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