| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2188 |
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| Symbol | |
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| ID | 5539669 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2810582 |
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| End bp | 2813125 |
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| Gene Length | 2544 bp |
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| Protein Length | 847 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640894321 |
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| Product | thiamine pyrophosphate protein central region |
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| Protein accession | YP_001432289 |
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| Protein GI | 156742160 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]
[COG0300] Short-chain dehydrogenases of various substrate specificities |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.941679 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATCGTA TGACCCATCC ACAGCGCACA TGGCTGATCA CCGGCTGCGC CAGCGGTTTC
GGCGCGCGCC TGGCGCAGCG ATTGATCGAG CGCGGTGAGC GCGTTGCCGC CACCGACCGC
AGTGTTGACC TTCTTACCCG TCTCCATTCA GACGATCCGG CGCGCCTGCT GTGCCTGGCA
ATGGATGTGA CCGACCCCGA TGCGATACGT CGCGCTGTCA GGACGGCAGT GGCGCACTTC
GGACGGATCG ATGTATTGGT CAACAACGCC GGGTTGGGGC ACGGCGGTCC GCTGGAAGAA
GCGAAACTGG AAGATATTCG CCGCCTCTTC GACGTGAATA TCATCGGCAT GATCCTTGTG
ACCCAGGCAG TTCTCCCTCA TATGCGCAAC GCAGGTCGCG GACACATTAT CAATCTGTCG
TCAGACAGCG GCGTGGTCGG GTTTCCGTTT CAGGGGATTT ATACTGCGAC CAAACACGCT
GTCGAGGGCT TTTCCGACTG TCTCTACCAG GAAGTGACGC CGTTCGGCAT CCATGTGTCG
GTCATTCAGC CGTGCGGTAT GTTTAAGACC GATATGCCTG CAAGCACGAT CACCGCCGCC
AGAGCAGCCA TGCGACCAGA CAGCCCGTAC TATGCGCGTG CTGTGCGCAT GGCGGAAGCG
CTTGCCGCCG CCTGGGAACA GAGCAGCGAC CCACAGGAGG TGGTTGACGC CATTATTGAA
ACTGCTGACG CCAACTCGCC GCCATTGCGT CGCCGCGTTG GTCCTCCTGA ACGCACCGGT
CTTGTCGGGT TACGCCACCG TATGCCGCAC GAGGAATTCG TCCGATTCAT CGCCAGTGTC
ACCGGCGATG GCGCCACACG TCCCGCTATG CCGAAAGGTC GTGTCGATGG CGGGCGACTG
GTGGTGCGCA CTCTGCGCGA AGCGGGGGTG ACCCATGCCT TCACGATTGT CGGCGGGCAC
AACTACCACC TGATTAATGC CTGCCGCGAA GAGGGCATCC GGGTGATCGA CGTGCGCAAC
GAAATGCATG CCGCACACAT GGCGGATGCC TATGCGCGCT TCACACGCCG ACCGGCGCTG
CTCACGGTGG ACGCTGCGCC AGGACTGGTC AATGCAGTGG CCGGCATCGA AGTCGCCTAT
GAAGCACAGG TTCCTATGAT CATTGCATGC GCACAGGGAT CGCTGGAAGG ACGCGACATC
GGCGTTATGC AGGCAATCGA TCAGGTGCGC CTGATGCGCC CGATCACCAA ATGGCAACGC
ACATGCTTCG ATGTCAGACG GCTGCCCGAA TATACCGCCG CTGCCGTGCG CCATGCCACC
ACCGGACGTC CCGGTCCGGC ATTTCTCGAT TTTCCGCTGG AGGTGATGCA CGCGGTCATT
GAGGAGGATA CCGTCACCTT TCCACGCCAT TATCGGGTGA CGGTCGGACC GCCGGGCGAT
CCGGCGCTGG TGCGTCAGGC GCTCGATGTG ATTCGCAAGG CGAGACGTCC GCTCCTGATC
GTTGGCAGCG GCGTCTGGTG GGCGCGCGGC GAGGAGGAAC TACGCCGTTT TGTCGAAACG
ACCGGCATAC CGGTGCTGAG CCGCAACCTG GCGCGCGGAA TCATTCCCGA TGACCATCCC
CTCTCTGCCG GGTTTTACCC CACCCCGGCA GCCATGGCGG ATGCCTTCCT GGTGATCGGC
ACACGACTCG ACTGGACGAT TGGCTACGGA CGCTTTCCGC TCTTCAGCAT GGACGCGCCG
GTCGTGCAGG TGGATATACA CCCCGAAAGC ATTGGCAAAA CGCGACCAAT CGACCTCGGC
ATCGTCGGCG ATGCAGCGCA GGTATTGCGT CAGCTCAATG AACTTGTTGC AGAAGGTAGC
GATTGGGCGA TGGAGAAGGA ATGGAGCCAC ATAGCACATG GCAGCATTGG CGCTATGCGC
GCAGAAACCG CCGCTGCCGC CGATCTGGCA GCGCGCGATC CCGCGCGACC GATGCACTCA
ATTCAGTTGA TGCAGGCGCT GGCGGATTGC CTGCCACGCG ACACGATTAA GATTGTGGAT
GGCGGGTACA GCGCGGCATT TGCCATTCAG TATCTTGATG CCTGCGTTCC TGGCGGCGTG
ACGTGGGTGG GCAGCACCGG GCACATTGGC GTGGGACTGG GATTTGCCAT TGGCGCAAAA
CTGGCGCACC CGGACCACCC CGTTGTGGCG ATCATGGGAG ACGGGGCATT TGGGCTGTGT
GGCATGGAGT TCGATACTGC CGTGCGACAC CATCTGCCGA TGATTGTGGT GATTGCCAAC
GATGCCGGGT GGGGTGAGAC GCGCGACGGT CAGCGACGGC GCTGGGGAGA CGCTGCTGTA
ATCGGCACAA ACCTGGGACC GACGCGCTAC GATGAACTGG CGCGCGCGCT CGGCGGCTAT
GGCGAGCGTG TCGAACGACC GGAAGCGATT GCGCCGGCGA TCCGGCGTGC GTTTGACTCA
GGATTGCCTG CGATTGTCGA TGTGCGCACC GACCCGGAGC AGCGCAGTGC CGCAGTAACC
GGATTACCGT GGATTGTCGA GTGA
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| Protein sequence | MHRMTHPQRT WLITGCASGF GARLAQRLIE RGERVAATDR SVDLLTRLHS DDPARLLCLA
MDVTDPDAIR RAVRTAVAHF GRIDVLVNNA GLGHGGPLEE AKLEDIRRLF DVNIIGMILV
TQAVLPHMRN AGRGHIINLS SDSGVVGFPF QGIYTATKHA VEGFSDCLYQ EVTPFGIHVS
VIQPCGMFKT DMPASTITAA RAAMRPDSPY YARAVRMAEA LAAAWEQSSD PQEVVDAIIE
TADANSPPLR RRVGPPERTG LVGLRHRMPH EEFVRFIASV TGDGATRPAM PKGRVDGGRL
VVRTLREAGV THAFTIVGGH NYHLINACRE EGIRVIDVRN EMHAAHMADA YARFTRRPAL
LTVDAAPGLV NAVAGIEVAY EAQVPMIIAC AQGSLEGRDI GVMQAIDQVR LMRPITKWQR
TCFDVRRLPE YTAAAVRHAT TGRPGPAFLD FPLEVMHAVI EEDTVTFPRH YRVTVGPPGD
PALVRQALDV IRKARRPLLI VGSGVWWARG EEELRRFVET TGIPVLSRNL ARGIIPDDHP
LSAGFYPTPA AMADAFLVIG TRLDWTIGYG RFPLFSMDAP VVQVDIHPES IGKTRPIDLG
IVGDAAQVLR QLNELVAEGS DWAMEKEWSH IAHGSIGAMR AETAAAADLA ARDPARPMHS
IQLMQALADC LPRDTIKIVD GGYSAAFAIQ YLDACVPGGV TWVGSTGHIG VGLGFAIGAK
LAHPDHPVVA IMGDGAFGLC GMEFDTAVRH HLPMIVVIAN DAGWGETRDG QRRRWGDAAV
IGTNLGPTRY DELARALGGY GERVERPEAI APAIRRAFDS GLPAIVDVRT DPEQRSAAVT
GLPWIVE
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