| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2043 |
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| Symbol | |
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| ID | 5539521 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 2619351 |
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| End bp | 2620073 |
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| Gene Length | 723 bp |
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| Protein Length | 240 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640894178 |
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| Product | MIP family channel protein |
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| Protein accession | YP_001432149 |
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| Protein GI | 156742020 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0580] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) |
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| TIGRFAM ID | [TIGR00861] MIP family channel proteins |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0536083 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACCGT TCCTTGGCGA AGTGATTGGG ACGATGTTGC TCGTCCTGTT AGGCGATGGT
GTGGTAGCCA ACGTCGTGTT GAGCAAAACG AAGGGGAATA ACAGCGGTTG GATCGTGATT
GCGACGGCGT GGGCGCTGGC AGTGTTCGTT GGCGCTTACG CGGTTGCGGC TGTGAGTGGA
GCGCATCTGA ATCCCGCCGT GACCATCGGA TTGGTAGTGG CGGGCAAGTT CGACGCCGCC
AGTGCGCCGA TTTATATCGC GGGGCAGTTC CTTGGCGCAT TTATCGGCGC GGTGCTGGTG
TTCCTCCACT ACTATCCGCA TTGGTCTGCA ACACAGGACC CTGGGCTAAA ACTGGCGGTC
TTCAGCACCG GCCCGGCGAT TCGCAGCACG GCGTGGAATC TGGTGAGCGA GATCATTGGG
ACGTTCGTGC TGGTCTTTGG CATTCTTGCC ATTGATGGAC CGGTGATGGA CGGCGGCAGT
TTTGGTGCGC TCGGTATTAT TCCGGTGGCG TTTCTGGTCT GGGTCATTGG TTTGTCGCTT
GGTGGCACGA CCGGTTATGC CATCAATCCG GCGCGTGATC TCGGTCCGCG TATTGCGCAC
GCCATTTTGC CCATTCCCGG CAAAGGCGAC AGTGATTGGG GCTACTCCTG GATTCCGGTC
GTCGGTCCGA TCATCGGCGG CGCTGTTGCG GCCGGGTTGT ATGTCGCTCT GGGTTCGTTC
TGA
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| Protein sequence | MSPFLGEVIG TMLLVLLGDG VVANVVLSKT KGNNSGWIVI ATAWALAVFV GAYAVAAVSG
AHLNPAVTIG LVVAGKFDAA SAPIYIAGQF LGAFIGAVLV FLHYYPHWSA TQDPGLKLAV
FSTGPAIRST AWNLVSEIIG TFVLVFGILA IDGPVMDGGS FGALGIIPVA FLVWVIGLSL
GGTTGYAINP ARDLGPRIAH AILPIPGKGD SDWGYSWIPV VGPIIGGAVA AGLYVALGSF
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