Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2024 |
Symbol | |
ID | 5539502 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 2596402 |
End bp | 2597874 |
Gene Length | 1473 bp |
Protein Length | 490 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640894159 |
Product | protoporphyrinogen oxidase |
Protein accession | YP_001432130 |
Protein GI | 156742001 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1232] Protoporphyrinogen oxidase |
TIGRFAM ID | [TIGR00562] protoporphyrinogen oxidase |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.364182 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGCGA TGCATTCGAC ATCGGCGGCA ACGCTGTTCC CGGGCGGTCA ACCGCACATC GTTGTGGTAG GCGGCGGGAT CAGCGGCATG AGCGCGGCAT ATGAACTGGG GCGCGCAACG CGCGACGGGG CGCCGCCGGT GATGGTCACG CTCATCGAGC GTGAGGCGCG TTTAGGGGGC AAGGTCGTCA CCGAGCGCAA CGGACCCTTC GTCATCGAAG GCGGACCCGA CTCGTTCATG GCGCAGAAAC CATGGGCTGC CGAACTGGCG CGTGAGATCG GTCTGGGTGA CGAGTTGATG GTCGCCTCGC CGATGCGCCG CACGACATGG GTGCTGATCC GTGGACGACC GCAACCGCTC CCCGAAGGCA TGCTCCTGAT CGTCCCCACA CGCATCGCAC CCTTTGCCTT CTCGCCGCTG ATTTCTCCCC TTGGAAAACT TCGTATGGCG CTCGACTTGT TCGTTCCGGC GCGCCGTGAC GATGGCGATG AGACGCTCGC CGACTTTATT CGCCGTCGCC TGGGGAATGA GGCGCTTGAT CGTCTGGCGG AGCCGATCCT CTCCGGCATT CACAGCGCTG AGTGCGAACG CCAGAGCATT CTGGCGACCT TTCCGCGCTT CCGCGAGTTG GAGAAACGCC ATGGCAGTCT GATCCGCGGC ATGCTTGCAG CGCGGCGCAC CGCGTCACCC TCTTCAGCGC ATCAGTCGCC CTTCATGACG CTGCGCGGCG GCATGGGGAC GCTCGTCGAG CGGTTGGAAC AACGTCTCAC GGCGCGTATC CTGACCAACC GCCGGGTGAT GGCGCTCACC TGTGATACAA CCGCTGCGCG TCCCTATCGT CTGTGGTTGG ACGACGGCGC CACGCTGGAT GCCGATGCCG TCATTCTGGC GACGCCATCC TACGCCGCTG CTGACCTCGT CGGTGCATCG TTCCCGGCGC TGGCGGATGC GTTACGCGCC ATCCGGTACG TTTCGACCGC CACGGTCTCA CTGGTCTACC GGCGCAGTGA GGTCGGGACG CCGCTCGATG GCTATGGTCT GGTCATTCCG CGCAGCGAAC AGACCTGGAT TAATGCATGC ACCCTCTCCT CGGTTAAGTT TCGCCATCGC GCGCCCGATG AGTATCTGTT GCTGCGCTGC TTCGTCGGCG GATCGCGTCG TCCAGAACTG CTGGCGCGGG ACGATGACGA CCTGGTGCGC ATGGCGCAGT CCGATCTGCG CGCCGTTCTG GGCATCACCG CCGTGCCGCT GCTGACGCGC GTGTATCGCT GGCATAACGG CAACCCGCAG TATGATGTCG GGCATCTGGA ACGAATCGCC GCGCTCGAGG CGCTTTGTCC GGCGGGTCTT TTGCTGGCCG GCGCCGCGTA TCGTGGCGTT GGCGTGCCCG ACTGCATCAA ACAGGGGCGT GAGGCGGCGC GTCGGGCGCT CGATGTGGTT GCGACCGCTC GCTATCCGGT GATGGAAAAG TAA
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Protein sequence | MTAMHSTSAA TLFPGGQPHI VVVGGGISGM SAAYELGRAT RDGAPPVMVT LIEREARLGG KVVTERNGPF VIEGGPDSFM AQKPWAAELA REIGLGDELM VASPMRRTTW VLIRGRPQPL PEGMLLIVPT RIAPFAFSPL ISPLGKLRMA LDLFVPARRD DGDETLADFI RRRLGNEALD RLAEPILSGI HSAECERQSI LATFPRFREL EKRHGSLIRG MLAARRTASP SSAHQSPFMT LRGGMGTLVE RLEQRLTARI LTNRRVMALT CDTTAARPYR LWLDDGATLD ADAVILATPS YAAADLVGAS FPALADALRA IRYVSTATVS LVYRRSEVGT PLDGYGLVIP RSEQTWINAC TLSSVKFRHR APDEYLLLRC FVGGSRRPEL LARDDDDLVR MAQSDLRAVL GITAVPLLTR VYRWHNGNPQ YDVGHLERIA ALEALCPAGL LLAGAAYRGV GVPDCIKQGR EAARRALDVV ATARYPVMEK
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