Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1965 |
Symbol | |
ID | 5539443 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 2515520 |
End bp | 2517169 |
Gene Length | 1650 bp |
Protein Length | 549 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640894100 |
Product | YidE/YbjL duplication |
Protein accession | YP_001432071 |
Protein GI | 156741942 |
COG category | [R] General function prediction only |
COG ID | [COG2985] Predicted permease |
TIGRFAM ID | [TIGR01625] AspT/YidE/YbjL antiporter duplication domain |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.103303 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGTGGT TCGTCGAACT ACTGAAGAGC AATACGCTCC TGCTCCTCTT TCTGGTGGCG GCGATCGGCT ATCCGCTCGG TCGCCTCCGA TTGTTCGGGC ACCGCCTCGG CGTTGCCGCC GTGCTCTTCG CCGGTCTGGC GATCGGTGCG CTTGACCCGG ACCTCAAATT GCCGGAGGTC GTCTACACCC TCGGACTGGT CGTATTCGTC TACACCATCG GGCTGAGCAG CGGCGCCGGA TTTTTTGCCT CGTTCCAGCA CAAAGGGCTG CGTGATAACC TGTTAATCGT CGGCATACTG ATCGTCGCTG CCCTGGCCGT CGCCGGCGTC CAGTATGCCT TCGGACTACG CCCAACTCTC GCTGCCGGAC TGTTCGCCGG AAGCCTGACC AACACGCCAG CGCTGGCTGC GGTGCTGGAG CAGATCAAAA CCACCGCCCC CGCCGATATA CGCGATCAAC TGCTGACCGA CCCGGTCATC GGGTATTCGA TTGCCTACCC GATCGGCGTG ATTGGGATGA TCGGCACGAT TGCCGCACTT CAGCGCGCCT GGCATGTAGA TTATACCAGC GAAACGCCGG CTCTGCGCGA TCTCGGCGCC GTGGGGCAAA AACTGGTTAA CCGCACCGTG CGCATTACAC GCCCGGAAAT CAGTCTGCTA ACCGTCGACG AACTGCTGCG CGCCAAGCAG TGGCGGATTA TCTTCGGCAG AACACGGCGC AACGGTCAGA TGACGCTGGT GGACGGCGCC ACCCATCTTC AGCAGGGCGA CCTGGTCAGT CTCATCGGCA CAGAGGAAGA GATCACCGAA GCTGCCGCAT TCCTCGGTGA GATGACGGAT GAACGCTTAG AACTCGACCG CAGCACGCTC GACTTCCGAC GCATCTTCGT GTCCAACCCA CAGGTCGTCG GGCGACCGCT GCGCGCATTA CGGTTGCCGC AACGCTTCGG CGCGCTGGTG ACGCGCGTGC GCCGTGGCGA TATGGAACTG CTGCCCCACG GCGATATGGT GCTGGAACTC GGCGACCGGG TGCGCGTCGT GGCGCTGCGC GAGCGCATGG ACGAGGTGAG CGAGTTCTTT GGCGACTCGT ATCGCGCCCT CAGTGAGATC GACATCCTCA CCTTCAGCCT GGGGCTGGCG ATGGGGCTGT TGATCGGCAT GATCCCCATT CCGCTTCCCG GCGGTGCGAC TTTTCGCCTC GGCGTCGCCG GGGGACCGCT GGTGATGGCG CTGATCCTGG GCGCGCGCGA ACGCACCGGA CCACTGGTGT GGAACATTCC ATACAGCGCC AACCTGACCC TGCGCCAGAT TGGGTTGGTG TTATTCCTGG CAGGCGTCGG CACACGATCT GGCTATGCGT TCGTCAGCAC CTTCTCCCAA AGCGGCGGAA TCGTGCTGTT GGTCACCGGC GCGGTCATCA CCTGTGGCGT GGCATTCCTG ACGCTGTGGA TCGGACACAA ATTGCTGCGC ATTCCGATGA GCCTGTTGAT CGGAATGCTC GCAGGCTTAC AGACCCAACC CGCAGTCCTT GCATTTGCGC TGGAACAGAC GAAGAACGAT GCGCCGAACA TTGGCTACAC CACGGTCTAC CTGATGGCGA TGATTGCCAA GATTCTGCTG GCGCAGGCGC TTGTGCTCTT TCTCCAGTAA
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Protein sequence | MSWFVELLKS NTLLLLFLVA AIGYPLGRLR LFGHRLGVAA VLFAGLAIGA LDPDLKLPEV VYTLGLVVFV YTIGLSSGAG FFASFQHKGL RDNLLIVGIL IVAALAVAGV QYAFGLRPTL AAGLFAGSLT NTPALAAVLE QIKTTAPADI RDQLLTDPVI GYSIAYPIGV IGMIGTIAAL QRAWHVDYTS ETPALRDLGA VGQKLVNRTV RITRPEISLL TVDELLRAKQ WRIIFGRTRR NGQMTLVDGA THLQQGDLVS LIGTEEEITE AAAFLGEMTD ERLELDRSTL DFRRIFVSNP QVVGRPLRAL RLPQRFGALV TRVRRGDMEL LPHGDMVLEL GDRVRVVALR ERMDEVSEFF GDSYRALSEI DILTFSLGLA MGLLIGMIPI PLPGGATFRL GVAGGPLVMA LILGARERTG PLVWNIPYSA NLTLRQIGLV LFLAGVGTRS GYAFVSTFSQ SGGIVLLVTG AVITCGVAFL TLWIGHKLLR IPMSLLIGML AGLQTQPAVL AFALEQTKND APNIGYTTVY LMAMIAKILL AQALVLFLQ
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