| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1895 |
|---|
| Symbol | |
|---|
| ID | 5539373 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 2436626 |
|---|
| End bp | 2437420 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640894032 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001432003 |
|---|
| Protein GI | 156741874 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0411] ABC-type branched-chain amino acid transport systems, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.045423 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGCTTC TGGAAGCAAA ACATGTCACC AAGCAGTTTG GCGGTCTCAC CGCAGTGAAT
GATGTGTCGC TCACTATCGA CGAAGGGAGC ATCGTGAGCG TCATTGGTCC CAACGGCGCA
GGGAAGACGA CGTTTTTCAA TGTGCTGACG GGGATTTATA AGCCGACGAA GGGTGCGATC
CTGTTCGATG GCAAAGATAT TACTGGTTTG CGTCCCGACC AGATCACGGC GCTGGGCATC
TGCCGCACAT TTCAGAACAT TCGCCTGTTC AATGCGATGA CGGTGCTCGA AAATGTGCTG
GTGGGCATGC ACACGCGCCT GAACGCTGGT TTGTGGCAGA TTCTGTTTGG GACGCCGTCG
GTTCGCGCCG AGGAACGGGT ATCGCTCGAC CGCGCGCGCG AGTTGCTCCG GTTTGTTAAT
CTCGATCATC AGCGCAATCA ATTGGCGCGC AACCTGCCAT ATGGCGATCA GCGCCGCCTG
GAAATTGCGC GGGCGTTGGC ATCGTCGCCG AAAATGATCC TGCTCGATGA GCCAACAGCA
GGCATGAATC CGCAGGAGAC CGCTGAGGCG ACCGATCTGA TCCGTCGGCT GCGCGATGAA
CTGGGCATCA CGGTGGTGCT GATCGAACAC GATATGCGCG TGGTGATGAC GATTTCGGAA
CGCATCACCG TGCTCGATTA CGGCACCAAA ATTGCCGAAG GCTTGCCCGA AGAGATTCGT
TCTAACCCGC GTGTGATTGA GGCGTACCTG GGTAAAGGCG CCGCCGCCCA CGGGGTGGAG
CAGGTGGGAG GTTGA
|
|---|
| Protein sequence | MALLEAKHVT KQFGGLTAVN DVSLTIDEGS IVSVIGPNGA GKTTFFNVLT GIYKPTKGAI
LFDGKDITGL RPDQITALGI CRTFQNIRLF NAMTVLENVL VGMHTRLNAG LWQILFGTPS
VRAEERVSLD RARELLRFVN LDHQRNQLAR NLPYGDQRRL EIARALASSP KMILLDEPTA
GMNPQETAEA TDLIRRLRDE LGITVVLIEH DMRVVMTISE RITVLDYGTK IAEGLPEEIR
SNPRVIEAYL GKGAAAHGVE QVGG
|
|---|
| |