| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1834 |
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| Symbol | |
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| ID | 5539312 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 2342051 |
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| End bp | 2343832 |
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| Gene Length | 1782 bp |
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| Protein Length | 593 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640893972 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001431943 |
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| Protein GI | 156741814 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0457] FOG: TPR repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGAAT CCTTGACTCC CCGGCAACGC GCAGAGCGCC TGATCGACGA GGGAATGGCG
GCAATCCGTG CCGGCGATCA GGCGCGCGCC CGCCAGTTAC TCAGTCAGGC AGTACAACTC
GATCCCCAGA ACGAACGCGG CTGGCTGTGG CTCTCTGGTG CGCTGACCGA TCCTGTGCAG
CGCCGCTACT GTCTCGAACG GGTCCTGGCG ATCAACCCGA AGAACGAGAT TGCGCAGCGC
GGGCTGGCAA GTCTTAAGCC TGCCGCTTCA TCGCCTGCTG CTCTGTCGCC ATCCCCCGCC
GCATCGGCGC CGAAACCGAC TGCTCCGTCG CAACCGGCGC AGCGGCAGCA ACCGGTGTTC
GACCCACTTG CGCCCGATGC GACCACGACA CGACGCACAG CGACCGCCAC GCCGCTGCCG
CGCCCGCCGA TACCTGCCAC CATCGCTCCG CCAGCACCCC AAACCGTTGC TCCTGACGCT
GCTGCGACGA CGACCGGGGT GCAGCAGCGA GCGCCGGACG ATCTCCGAAA GCCTCCCCCG
GCGATGCCTG CCGAATCAGC GCCGGTTGAT TCCCTGGCAT CACTGCGTCC CGGCGCAGCT
GCGAAGCGCA GCGGTTTGTT GCGACGACCG GGCGCTGCCG GCAACGCCGC CGCAGATGCT
CCACCAACCG CCATACCTGT CGAGCGGTCT AAAAAGCGCA CACGGACCGT TATCGTTGCG
CTCGTGGGCA TTCTTGCGGT CGTCGTGCTG TTGCTCGTCG GACTGATGTA TCTGTATCCA
GATATTCTCA ATCCGCCGCA ACCAACCGAG GAAGCGGCGA TTCCAACCGT TGAGCCGGAA
GCGCCGACGC CGGTTCCAAC GCCGACGAGT ATTCCAACTG CTACTCCGGC GCCAACGCCG
ACGCCGGTTG ATGTTCAAGC GCTGGTGCGT GAGGCGGAAG AACTTGCCGC TAGTGGCAGC
CTGGGACAGG CGGCAGAACG CTATACCGAA GCGATCCGCG CCGATCCGTC ATCGTTCGAG
GCATACTTTG GGCGCGCTCA GGTCAACTTC AATCTGTCGC TCTTCCAAAA TGCTGTCGAT
GATTTCACCA GAGCATTGGC GCTCGATCCG GAGAACGCCG AGGCGTACCA CCAGCGCGCG
CGCGCCTTCT ATCGCCTGCA ACAGTACGAC GAAGCCATTC GTGATTTCAC CGAGGCGCTT
GCGCGTGATC CCAACAACGA TGTTCTCCTG ATGCGCCGCG GCGTCGCCTA CCGCGACAAG
GGCCAGTACG ACGAGGCGCT GGCGGATTTC GATCAGTCGC TCCAGTTGAA CCCGGACGTC
AGTTTCACCT ATTACCACCG CGCATTGTTG TTCCAGGCGA CCGGCAGGCT TGAGCGGGCG
CGCGCCGATT TTGATCGGGC GCTGACGATT GCGCCGGAGT ATCGTCTGGC ATATGTCGGG
CGTGGCGGGT TGCGCTTAGA GCAGGGCGAT GCGCGTGGCG CGCTCAGGGA CTGCACCCGC
GCCATCGAAC TCGACGCTAC CGAGATCGAT GCGTATTTCT GCCGCGCCAG AGCCGCTATT
GCGCTCCGTG ATTACCGCGC CGCCGTCGCC GACCTCGATA CCGTCATTGC GCGCGATCCC
GATAGCGCCG ATGCTTACCG CGAGCGTGGG AGGGCGCACC AGGCGCTGCG CGACACCGAT
GAGGCGCGGG CGGATTATCA GCGCGCCATC GAACTCTACC GCCTTCAGGG ACGCGACAAG
GACCTGGCGG AGGTCGAAAA GTTGCTCGCT GCGCTGAAAT AG
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| Protein sequence | MNESLTPRQR AERLIDEGMA AIRAGDQARA RQLLSQAVQL DPQNERGWLW LSGALTDPVQ
RRYCLERVLA INPKNEIAQR GLASLKPAAS SPAALSPSPA ASAPKPTAPS QPAQRQQPVF
DPLAPDATTT RRTATATPLP RPPIPATIAP PAPQTVAPDA AATTTGVQQR APDDLRKPPP
AMPAESAPVD SLASLRPGAA AKRSGLLRRP GAAGNAAADA PPTAIPVERS KKRTRTVIVA
LVGILAVVVL LLVGLMYLYP DILNPPQPTE EAAIPTVEPE APTPVPTPTS IPTATPAPTP
TPVDVQALVR EAEELAASGS LGQAAERYTE AIRADPSSFE AYFGRAQVNF NLSLFQNAVD
DFTRALALDP ENAEAYHQRA RAFYRLQQYD EAIRDFTEAL ARDPNNDVLL MRRGVAYRDK
GQYDEALADF DQSLQLNPDV SFTYYHRALL FQATGRLERA RADFDRALTI APEYRLAYVG
RGGLRLEQGD ARGALRDCTR AIELDATEID AYFCRARAAI ALRDYRAAVA DLDTVIARDP
DSADAYRERG RAHQALRDTD EARADYQRAI ELYRLQGRDK DLAEVEKLLA ALK
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