| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1764 |
|---|
| Symbol | |
|---|
| ID | 5539242 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 2267248 |
|---|
| End bp | 2268018 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640893903 |
|---|
| Product | alpha/beta hydrolase fold |
|---|
| Protein accession | YP_001431874 |
|---|
| Protein GI | 156741745 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.112264 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATACACC CACGTGAGTA CACGCTTGCC GGTCCTGAGC ATGCGCCGGC AATCGTCCTG
ATCCATGGCG CACGCATGAC GCGTGCGCTC TGGCAACCGC AGATCGACGC GCTCGGCGCT
TCCCTGCGCG TGATCGCTCC CGATCTGCCG GGGCATGGCG CGCTGGCGCA CGTGCCGTTT
TCCCTCGATG CCGCCGTATC GCAGATCGCA ACCGTCATCG ACACGGTAGC AGACGGGCGG
GCGATTGTCT GCGGTCTGTC GCTGGGGGGA TATGTGGCGC TGGCGTTCGG CGCCCGACAC
CCACAGCGCA CAACGGCGCT GGTGTTGTCC GGTTGTACGT TCGCGTTCCA CGGGCTGCCC
GGTCGTCTCA TAGGAGCGCC CTACGTCGCC GTCACCCGCT TTGCGACGCG CACCTTCTCG
CCGTTGCTGG CGCGCGCCGA GGAACGCACG CTGCGCAAGA CCTACCCCGC AGCACTGGCG
GAACCGATCA TCGCGCGCGG CTTCTTCTAC CGCTTTTACG CCGATATTTC CGCCGCACTG
CTCGACTTCG ATCCGCTGCC CGCATTGCGC GCCTGTGATA TGCCGGTGCT GTTGCTCAAC
GGCGCCAATG ATCGCTTCTT TCGACGCGAT GAGCACTCCT ACCTGCGCGC CCTGCGTCAG
GGTCGGCTGC GCCTGATCGA AAACGCATCC CACCTGGCGA ACCTTGATCA ACCGGAAGCG
TACACCACGG CGTTGCGCGA TTTTGTATCC GAGGTTGTAG CCGTGCAATG A
|
|---|
| Protein sequence | MIHPREYTLA GPEHAPAIVL IHGARMTRAL WQPQIDALGA SLRVIAPDLP GHGALAHVPF
SLDAAVSQIA TVIDTVADGR AIVCGLSLGG YVALAFGARH PQRTTALVLS GCTFAFHGLP
GRLIGAPYVA VTRFATRTFS PLLARAEERT LRKTYPAALA EPIIARGFFY RFYADISAAL
LDFDPLPALR ACDMPVLLLN GANDRFFRRD EHSYLRALRQ GRLRLIENAS HLANLDQPEA
YTTALRDFVS EVVAVQ
|
|---|
| |