| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1667 |
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| Symbol | |
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| ID | 5539143 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2145958 |
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| End bp | 2147292 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640893804 |
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| Product | signal recognition particle protein |
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| Protein accession | YP_001431777 |
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| Protein GI | 156741648 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0541] Signal recognition particle GTPase |
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| TIGRFAM ID | [TIGR00959] signal recognition particle protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000671364 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00227852 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTTGAGA GTCTCTCCGA CCGATTGCAG GCGGTTTTCC AAAAACTCGG CGGCAAAGGC
AAACTGACCG AGGAGGACGT GCGCGAGGCG ATGAAGCAGG TGCGCATCGC GCTGCTCGAA
GCCGACGTCA ATCTCAAGGT GGTGCGCGAA TTCGTTGCGC GTGTGACGGA GAAAGCCGTC
GGTGAAGAGG TCACGAAAAG TCTGACGCCA GCGCAGCAGG TCATTAAGAT CGTTCACCAG
GAATTGATCG ATCTGCTCGG TCAGGCGAAT GTGCCGCTCG CCGAAGCGCG CCCGGGTCCG
ACGATCATTA TGCTGATCGG CTTGCAGGGT TCCGGCAAGA CGACGACCGC CGCCAAACTG
GCGCTCTGGC TGCGCAAGAA GGGCAAACGT CCACTGCTGG TCGCTGCCGA CATCTATCGC
CCGGCAGCCA TTACCCAACT CGAGTCGCTG GGGCGGCAAC TTGGCATTCC GGTGCATTCG
GAGGGCGCTC AGTCCCGCCC GCCCGACATT GCGCGCAATG CTGTGCGCCG CGCGCGCGAC
GAGAGCATCA CGCACGTCAT TATCGACACT GCCGGACGAC TTCAGATCGA TGAGCCGCTT
ATGGTGGAAC TCGAACAGAT CAACGCAGCC GTCGAACCGG TGGAGCGTTT GTTGGTCGTG
GATGCGATGA TCGGGCAGGA AGCGGTGCGC GTTGCCGAGG AGTTCAACCG GCGCGTCGGG
CTGACCGGCA TTATCTTTAC GAAGATCGAT GGTGATGCGC GCGGCGGCGC AGCCTTGTCG
GTGCGCGCCG TCACCGGCGT GCCGATCAAG TTCCTGGGGT CGGGCGAGAA GGTCGAAGCC
AGTACGATTG AGCCGTTCCA TCCGGATCGG TTGGCGTCGC GCATCCTGGG GATGGGCGAT
GTGCTGTCGC TGATCGAACG CGCCGAGGCG ATCTACGATG AAGAGCAGGC GCGCAAGATG
CAGAAGAAAC TGGTCAAGGG GTCGTTCGAT TTCGAGGATT TCCTGGCTTC GATGCAGCAG
ATGCGTAAAC TTGGTCCGCT CCAGCAAATT CTCGGCATGA TTCCGGGGCT TGATAAACTG
GCGCGCGAGG AGATTATTAC CGAAAAGGAC TTGAAGAAGA TCGAGGCGAT TATCTTCTCG
ATGACGAAGG AAGAACGCCG CAACCCGGAT CTGATCAAGG GGCGGCGCAA GGAACGTATT
GCGCGTGGCA GCGGTACGCA GGTGCAGGAA GTGACTCAAC TGGTCAATCA GTTCCGTCAG
ATGCAGCGGA TGATGAAACG TATGGGCGGC AAAGGTGGCA TCGACCCGCG TGAGTTGATG
CGCCGGCTGC GTTAG
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| Protein sequence | MFESLSDRLQ AVFQKLGGKG KLTEEDVREA MKQVRIALLE ADVNLKVVRE FVARVTEKAV
GEEVTKSLTP AQQVIKIVHQ ELIDLLGQAN VPLAEARPGP TIIMLIGLQG SGKTTTAAKL
ALWLRKKGKR PLLVAADIYR PAAITQLESL GRQLGIPVHS EGAQSRPPDI ARNAVRRARD
ESITHVIIDT AGRLQIDEPL MVELEQINAA VEPVERLLVV DAMIGQEAVR VAEEFNRRVG
LTGIIFTKID GDARGGAALS VRAVTGVPIK FLGSGEKVEA STIEPFHPDR LASRILGMGD
VLSLIERAEA IYDEEQARKM QKKLVKGSFD FEDFLASMQQ MRKLGPLQQI LGMIPGLDKL
AREEIITEKD LKKIEAIIFS MTKEERRNPD LIKGRRKERI ARGSGTQVQE VTQLVNQFRQ
MQRMMKRMGG KGGIDPRELM RRLR
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