| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1512 |
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| Symbol | |
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| ID | 5538988 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 1931195 |
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| End bp | 1934113 |
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| Gene Length | 2919 bp |
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| Protein Length | 972 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640893650 |
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| Product | DNA polymerase I |
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| Protein accession | YP_001431623 |
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| Protein GI | 156741494 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.43872 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0397579 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCACACA ACCGTCCGCT GCTGTTGCTG ATCGATGGTC ATGCGTTGGC GTATCGCGCC
TTCCACGCGC TGGCGGAAGC GGGGTTGCGC TCCTCGACCG GCGAGCCAAC CTATGCGGTC
TACGGGTTCA CCTCGGCGAT GCTCAATGCC ATCGAGGAGT ATCAACCGGA ATATGCCGCA
GTGGCGTTCG ATGTCGGCAA GACTTTCCGC GACGATCTGT ACGCCGAATA CAAGGCGAAC
CGCGCCGAGA CCCCGGCTGA GTTTGAGCAG CAACTGGAAC GCATCAAGCA GGTGCTAGCG
GCGTTCGACA TTCCGATCTA TACCGCCGAA GGATACGAAG CCGATGATGT GATCGGCACG
CTGGCGCGTC AGGCGACTGA ACGCGGCGTT GATGTGCTGA TCCTCACCGG CGATACCGAT
ACGCTGCAAC TGGTCGACGA TCATGTGACC GTGCTCCTCA ACAATCCGTA TCTCCGCGGA
CCGAAAAATA CCACGCGCTA CGGCGTCGCG GAGGTGACGG AACGCTACAA AGGGCTGCGC
CCCCATCAAC TTGCCGACCT GCGCGGCTTG AAGGGCGATC CGTCCGACAA TATCCCCGGT
GTCAAAGGCA TTGGTGAGGC TGGCGCAATT GCGCTCCTCA ATCAGTTTGG CACAATCGAG
AACCTGTACG ACCATCTGGA CGAAGCGCCG AAACGCTATC AGAAGCATCT CGAAGGGCAG
CGCGACATTG CGCTGTTCAG CAAGAAACTG GCGACCATTG TGTGTGATGC GCCGGTAACG
CTCAACCTTG CAGACGCAAC GCTCGCCGAT TACGACCGCA GCCGGGTGAT CGCGGTCTTT
CAGGAACTCG AGTTTGGTGC ATCGCTGGTG AAGCGCCTTC CGCCATCCGG CAGTACGACC
GTTGCGCAGC CGCTGCCGTC CATACCGCAG GCAGACGCAT CGGCGCCGCT TCAGGCGGAC
ATGTTCGCGC CGGAAGCGCC TGCTGTGCGA GAGTCGTCCG CCGAGCCGCA GCAGTTGACC
CTGTTTGGCG ATCCAGAGGT TGTGCCGCCG CCGGTCGCGC ATGTCGAGGC GCCGCTGCGC
GCAGCGCCGG GTGAATACCG CGCTGCCTGC ACCGATGCCG ACCTGGAAGC GGTGGTCGCC
GAACTCGCCA CGGCGCCGCT GGTTGCGTTC GATACCGAAA CGCGCGGGAT GAACCCGCTG
CGCGATGATC TCGTCGGTCT GTCGCTGGCG ACGGTCCCCG GTCGAGCCTG GTACATTCCC
GTCGGGCATA CCACCGGCGA GATGCAATTG CCGCGCGATC GGGTGATCGC GGCGCTACGC
TCATTCTTTG CCGATCCGGC GCGCCCCAAG GTTGCCCACA ACGCCAAGTT TGATATCGAA
GTGCTGGAAC GCGCCGGCAT GCCGGTCGCC GGTTTGTCGT TCGATACGAT GCTGGCGGCT
GGCTTGCTCG ACAAACGTCG TAATTTGAAA GACCTGGCGT TCTACGAACT GGAACTCGCT
GAACCGCTGG ACGCAATTGG CGACCTGATC GGCAAGGGGA AGAACCAGGT CACCTTCGCA
GAGGTGCCGA TTGCCCGCGC TACGCGATAT GCTGCTGCCG ACGCCGATAT GACGCTGCGC
CTGCAACCGG CGCTCGAAGC GAAACTGCGT GCTGCCGGGA GTCTCGCCGA TATGTTCTAC
CGCCTGGAAA TGCCGCTCGT GCCGGTGCTG GTGCGGATGG AGCAGTCCGG CATTCTGCTG
GATGTTCCGT ATATGCGCGC TCTGGGGGAG CGCATGGGTC GGGAACTTGC ACAGATCGAG
CAGCAGATCT TTGCCATCGC CGGGAAACCG TTCAATATCA ACTCCGGCGA TCAGTTGAGC
GAGGTGCTGT TCGGTCCCAA GATCAACCTG CCCACAACGG GTCTCGAACG CACCCGGACA
GGGCGCTACT CGCTGACGGC GCAGGCGCTC GAAGAGTTGC AGGCAAGCGA CACTACCGGC
ATTATTGAGT TAATCCTGCG CCACCGTCGC CTGAGCAAAC TCAAATCAAC CTATGTTGAT
GAACTCCCGG CGCTGGTCAA CCCGGAGACC GGCAGAGTCC ATACCGATTA CAATCAGCTT
GGTGCGGCGA CCGGGCGGTT GAGCAGCAAT TCGCCGAACC TGCAAAATAT TCCAACCCGC
ACCGAAGAGG GGCGCGAGGT GCGGCGCGGC TTCATCGCTG CCCCCGGTCA TGTGTTGATC
GCCGCCGACT ATTCGCAGAT CGAGTTGCGC GTGCTGGCGC ACATCACCGG CGATCCGAAC
CTGATCCAGA CGTTTATTGA AGGGCGCGAC ATTCACGCAG CCACCGCCGC ACGTCTGTTC
GGCGTCGGTT TCAATGCCGT GGACAAGAAT CAGCGGCGGA TCGCCAAAAC CGTCGTTTTT
GGCGTCATCT ACGGCATCAG CCCATTCGGG TTGGCGCAAC GCCTGGGTAT TTCGCGCGAA
CAGGCGCGCA ACCTGATCGA TAGCCTGTTC AATCAGTTCC CCCGCATCCG CGACTACATC
GACCGCACGC TGGAAACCGG ACGGAATGAA GGGTATGTGC AGTCGCTCTT CGGCCGCCGC
CGCCCCATGT TCGACCTGCG CACGTCCGGT CCGCGGCGTC AGGCAGCCGA ACGTGAAGCG
ATCAACCATC CGATCCAATC CACAGCGGCG GACATCATGA AACTGGCGAT GATTGCTGTG
GATGCCGAAC TGCGTCGCCG CCGGTTGCGC ACCCGCATGT TGCTCCAGGT TCACGACGAA
TTGATCTTCG AGGCGCCGGA GGCGGAAGTG GATGAGGTGG TGGCGCTGGT GCGCGAGCGA
ATGGAAGGGG TGTTGAGCGA TATGCACCCG CCGTTCGCCG TCCCGCTGCG CGTCGAGATC
GAAAAAGGTT CGAATTGGGA AGAACTGACG CCAGTGTGA
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| Protein sequence | MAHNRPLLLL IDGHALAYRA FHALAEAGLR SSTGEPTYAV YGFTSAMLNA IEEYQPEYAA
VAFDVGKTFR DDLYAEYKAN RAETPAEFEQ QLERIKQVLA AFDIPIYTAE GYEADDVIGT
LARQATERGV DVLILTGDTD TLQLVDDHVT VLLNNPYLRG PKNTTRYGVA EVTERYKGLR
PHQLADLRGL KGDPSDNIPG VKGIGEAGAI ALLNQFGTIE NLYDHLDEAP KRYQKHLEGQ
RDIALFSKKL ATIVCDAPVT LNLADATLAD YDRSRVIAVF QELEFGASLV KRLPPSGSTT
VAQPLPSIPQ ADASAPLQAD MFAPEAPAVR ESSAEPQQLT LFGDPEVVPP PVAHVEAPLR
AAPGEYRAAC TDADLEAVVA ELATAPLVAF DTETRGMNPL RDDLVGLSLA TVPGRAWYIP
VGHTTGEMQL PRDRVIAALR SFFADPARPK VAHNAKFDIE VLERAGMPVA GLSFDTMLAA
GLLDKRRNLK DLAFYELELA EPLDAIGDLI GKGKNQVTFA EVPIARATRY AAADADMTLR
LQPALEAKLR AAGSLADMFY RLEMPLVPVL VRMEQSGILL DVPYMRALGE RMGRELAQIE
QQIFAIAGKP FNINSGDQLS EVLFGPKINL PTTGLERTRT GRYSLTAQAL EELQASDTTG
IIELILRHRR LSKLKSTYVD ELPALVNPET GRVHTDYNQL GAATGRLSSN SPNLQNIPTR
TEEGREVRRG FIAAPGHVLI AADYSQIELR VLAHITGDPN LIQTFIEGRD IHAATAARLF
GVGFNAVDKN QRRIAKTVVF GVIYGISPFG LAQRLGISRE QARNLIDSLF NQFPRIRDYI
DRTLETGRNE GYVQSLFGRR RPMFDLRTSG PRRQAAEREA INHPIQSTAA DIMKLAMIAV
DAELRRRRLR TRMLLQVHDE LIFEAPEAEV DEVVALVRER MEGVLSDMHP PFAVPLRVEI
EKGSNWEELT PV
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