Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1318 |
Symbol | |
ID | 5538790 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 1697452 |
End bp | 1697886 |
Gene Length | 435 bp |
Protein Length | 144 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640893455 |
Product | UspA domain-containing protein |
Protein accession | YP_001431432 |
Protein GI | 156741303 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2205] Osmosensitive K+ channel histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0138898 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCGAAC AACGGGCTGC GCCGGTGCGC ATTCTGGTGT GCATCAGTGA AGAAGAGCAA TCGCAGGCGG TCATCCGCTA TGCGGCGCGG GTCGGGGTCG AATTGGGCGC CGAGTTGCTG GCGCTGCACG TCGAGCCACC GGGCGCTGCC ACACGCCGCT CGGCGCGCGC CGCGCAGCAA CTGGAGCGCA ACCTGCGCCT GGCGCGCGAT CTGGGCGCCC ATGTCAGGGT TATCGACAGT CATCGGGTGG TTGATTCCAT TCTCCGCTAT GCGCACGACC ACAACGTGCA GCGCATTATC GTCGGCAAGC CGCGCCCGCG CACCTGGCGC CACTGGTTCA CCGGCGATAT TGTGACCAGG CTGCTCCGCG AGACGGACAT TCCCATCGAA GTGGCGCCGG GGGTTGCTGA AGAGCAGATC ACAGTGGGCG GATAA
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Protein sequence | MTEQRAAPVR ILVCISEEEQ SQAVIRYAAR VGVELGAELL ALHVEPPGAA TRRSARAAQQ LERNLRLARD LGAHVRVIDS HRVVDSILRY AHDHNVQRII VGKPRPRTWR HWFTGDIVTR LLRETDIPIE VAPGVAEEQI TVGG
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