Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1290 |
Symbol | |
ID | 5538762 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 1662944 |
End bp | 1664377 |
Gene Length | 1434 bp |
Protein Length | 477 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640893428 |
Product | EmrB/QacA family drug resistance transporter |
Protein accession | YP_001431405 |
Protein GI | 156741276 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.573102 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAACGCA AATGGTGGGC GCTGCTGGCA GTGGCAACCG GCGTATTCAT GAGCACCATC GACGGCTCAA TCGTCAACAT TGCGCTCAAA ACGTTGCAGG ATTCGTTTGG CGCCGGGTTG CACGAAGTCG AATGGGTGGT GCTGGCATAT CTGTTGGGGA TCACCTGCCT GCTGCCGAGC ATGGGGCGGC TGGGTGATAT GATCGGTAAG CGGAGCGTGT ATCTGATCGG CTTTGTCGTA TTCACCATCA GTTCGGCGTT GTGTGGGCTG TCGTGGAACA TCAACGCGCT AATCGGTTTT CGCGTGCTGC AAGCCATTGG CGCCGCAATG ATTCAAGGGG TTGGCGCAGC ACTGCTGGTG GAAGCCTTCC CGCCTTCACA GCGCGGTCAG GCGCTTGGCT ATATCGGCAC GGCAGTTGCC GCCGGCATTC TGACCGGTCC GGTATTGGGC AGAGCGCTGA TCAGCGCGGT CGGCTGGCAG GCGATTTTCT ATGTCAATAT TCCGATCGGC ATCGGCGCCA TTGCGCTGGC GGTGCGCGCA TTGCCTACCG ACCGCATCCG CACGACGCAG ACATTCGATC TCGTCGGCGC AGGGTTGCTG GGCATCGGGC TGCTGCTCGT GCTGCTGGCG CTCACCGAGG GGCAGGTATG GGGCTTCACG GACTGGCGCA CGCTGGCGGC GCTGGGGAGC GGCGGCGCGT TGCTGGTCGG CTTTGTGTGG TGGGAATACC GCGCCACAGC GCCGATGATC GACCTGCGCC TGTTCCGCGC GCCAGCGTTT AGTTTCAGTC TGATCGCCGC ATTCCTGATC TTCCTGGCAG GCGCGTTCAA CTTCCTCCTG ATCCCCTACT ACCTTCAGAA GGCGCTCGGC TACTCGCCGC AAACGACGGG GCTGACCCTG ATCGCCTCGC CGCTGGTGCT CTCGCTCGTG TCGCCGATCA GTGGACGACT GTCGGACCGG TTCGGCGCGC GCTGGTTGGG GATTATCGGG CTGGCGCTGA CCACCGCCGG TCTGTTGAGC ATGACGACAC TGACCACCCA GAGCGCGCAA ATGGATGTTG TGTTGCGCCT GATGGTGATC GGCGCCGGGT TTGGTCTCTT CCAGTCGCCG AACAACAGCC TGATCATGGG GAGCGTGCCG CGCGCCAATC TCGGTGTTGC GGGCAGTTTG CTGGCAGTGA TGCGCACCCT GGGGCAAACG ACCGGAGTCG CCATTGCGGG CGCTATCTGG GCAACGCGCG TGATCGCAGC CGCCGGGCAG TCGTATGAAC CGGTGACCGA TGCGCCGCCA TTTGCGCTGG TCGCCGGCTT GCACGACGCC ATGCTGGTTG CAGCGTTCCT GGCAGCCATT GCAATCGTGC CGACTCTGGT GCGCGGGCAG CCATCGGGGG AACAGCAGCG CGAAGCGGTG CAGCAGGCGC AGACGCGGGG ATAA
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Protein sequence | MERKWWALLA VATGVFMSTI DGSIVNIALK TLQDSFGAGL HEVEWVVLAY LLGITCLLPS MGRLGDMIGK RSVYLIGFVV FTISSALCGL SWNINALIGF RVLQAIGAAM IQGVGAALLV EAFPPSQRGQ ALGYIGTAVA AGILTGPVLG RALISAVGWQ AIFYVNIPIG IGAIALAVRA LPTDRIRTTQ TFDLVGAGLL GIGLLLVLLA LTEGQVWGFT DWRTLAALGS GGALLVGFVW WEYRATAPMI DLRLFRAPAF SFSLIAAFLI FLAGAFNFLL IPYYLQKALG YSPQTTGLTL IASPLVLSLV SPISGRLSDR FGARWLGIIG LALTTAGLLS MTTLTTQSAQ MDVVLRLMVI GAGFGLFQSP NNSLIMGSVP RANLGVAGSL LAVMRTLGQT TGVAIAGAIW ATRVIAAAGQ SYEPVTDAPP FALVAGLHDA MLVAAFLAAI AIVPTLVRGQ PSGEQQREAV QQAQTRG
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