Gene Rcas_1290 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1290 
Symbol 
ID5538762 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1662944 
End bp1664377 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content63% 
IMG OID640893428 
ProductEmrB/QacA family drug resistance transporter 
Protein accessionYP_001431405 
Protein GI156741276 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.573102 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACGCA AATGGTGGGC GCTGCTGGCA GTGGCAACCG GCGTATTCAT GAGCACCATC 
GACGGCTCAA TCGTCAACAT TGCGCTCAAA ACGTTGCAGG ATTCGTTTGG CGCCGGGTTG
CACGAAGTCG AATGGGTGGT GCTGGCATAT CTGTTGGGGA TCACCTGCCT GCTGCCGAGC
ATGGGGCGGC TGGGTGATAT GATCGGTAAG CGGAGCGTGT ATCTGATCGG CTTTGTCGTA
TTCACCATCA GTTCGGCGTT GTGTGGGCTG TCGTGGAACA TCAACGCGCT AATCGGTTTT
CGCGTGCTGC AAGCCATTGG CGCCGCAATG ATTCAAGGGG TTGGCGCAGC ACTGCTGGTG
GAAGCCTTCC CGCCTTCACA GCGCGGTCAG GCGCTTGGCT ATATCGGCAC GGCAGTTGCC
GCCGGCATTC TGACCGGTCC GGTATTGGGC AGAGCGCTGA TCAGCGCGGT CGGCTGGCAG
GCGATTTTCT ATGTCAATAT TCCGATCGGC ATCGGCGCCA TTGCGCTGGC GGTGCGCGCA
TTGCCTACCG ACCGCATCCG CACGACGCAG ACATTCGATC TCGTCGGCGC AGGGTTGCTG
GGCATCGGGC TGCTGCTCGT GCTGCTGGCG CTCACCGAGG GGCAGGTATG GGGCTTCACG
GACTGGCGCA CGCTGGCGGC GCTGGGGAGC GGCGGCGCGT TGCTGGTCGG CTTTGTGTGG
TGGGAATACC GCGCCACAGC GCCGATGATC GACCTGCGCC TGTTCCGCGC GCCAGCGTTT
AGTTTCAGTC TGATCGCCGC ATTCCTGATC TTCCTGGCAG GCGCGTTCAA CTTCCTCCTG
ATCCCCTACT ACCTTCAGAA GGCGCTCGGC TACTCGCCGC AAACGACGGG GCTGACCCTG
ATCGCCTCGC CGCTGGTGCT CTCGCTCGTG TCGCCGATCA GTGGACGACT GTCGGACCGG
TTCGGCGCGC GCTGGTTGGG GATTATCGGG CTGGCGCTGA CCACCGCCGG TCTGTTGAGC
ATGACGACAC TGACCACCCA GAGCGCGCAA ATGGATGTTG TGTTGCGCCT GATGGTGATC
GGCGCCGGGT TTGGTCTCTT CCAGTCGCCG AACAACAGCC TGATCATGGG GAGCGTGCCG
CGCGCCAATC TCGGTGTTGC GGGCAGTTTG CTGGCAGTGA TGCGCACCCT GGGGCAAACG
ACCGGAGTCG CCATTGCGGG CGCTATCTGG GCAACGCGCG TGATCGCAGC CGCCGGGCAG
TCGTATGAAC CGGTGACCGA TGCGCCGCCA TTTGCGCTGG TCGCCGGCTT GCACGACGCC
ATGCTGGTTG CAGCGTTCCT GGCAGCCATT GCAATCGTGC CGACTCTGGT GCGCGGGCAG
CCATCGGGGG AACAGCAGCG CGAAGCGGTG CAGCAGGCGC AGACGCGGGG ATAA
 
Protein sequence
MERKWWALLA VATGVFMSTI DGSIVNIALK TLQDSFGAGL HEVEWVVLAY LLGITCLLPS 
MGRLGDMIGK RSVYLIGFVV FTISSALCGL SWNINALIGF RVLQAIGAAM IQGVGAALLV
EAFPPSQRGQ ALGYIGTAVA AGILTGPVLG RALISAVGWQ AIFYVNIPIG IGAIALAVRA
LPTDRIRTTQ TFDLVGAGLL GIGLLLVLLA LTEGQVWGFT DWRTLAALGS GGALLVGFVW
WEYRATAPMI DLRLFRAPAF SFSLIAAFLI FLAGAFNFLL IPYYLQKALG YSPQTTGLTL
IASPLVLSLV SPISGRLSDR FGARWLGIIG LALTTAGLLS MTTLTTQSAQ MDVVLRLMVI
GAGFGLFQSP NNSLIMGSVP RANLGVAGSL LAVMRTLGQT TGVAIAGAIW ATRVIAAAGQ
SYEPVTDAPP FALVAGLHDA MLVAAFLAAI AIVPTLVRGQ PSGEQQREAV QQAQTRG