Gene Rcas_1259 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1259 
Symbol 
ID5538731 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1629682 
End bp1631055 
Gene Length1374 bp 
Protein Length457 aa 
Translation table11 
GC content64% 
IMG OID640893397 
Productglycosyl transferase group 1 
Protein accessionYP_001431374 
Protein GI156741245 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0438] Glycosyltransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00525262 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACGACT TCTCTCCCGA TGCCCTGCGG GTTGCCATGC TGGCGCGTGT TGTCTTTCCA 
CTCCACGGCT TTGGCGGTAT TGAACGTCAC GTCTTCCACC TGACGACGCA CCTGGCGCGG
CTTGGCGTGC GGATCACGCT CTATGTGCAG ACACCGCACG GCCATACGCT CGATCTCGAT
GATGATCCGG CGCGACCGAT CAACCCCTAT GCCGATGTTC TCCCCGGCAT CGAGCGCGTT
ATGACACTAC GCTACGACTA TACCTCGCCG GCGCTGCGTC CCAATTCGAT TGCGGGACGA
CAGATCAACT ATCCCTGGTA TTCCTGGCGG CTTGGGCGCA TAGCGGCGGC AGCCGCGCGG
CGCGGCGCGT ATGACGTGGT GCATGCCCAG GGGTTGTGCG CATTCGGCTA TGGCTGGATC
CGCGTCCGCG ATCCGTTGCT TCGTCGCGTT CCGTTTATCG CCAATCCGCA TGGACTGGAA
GAGTATCGAA CACCCGACTG GCGCAAATGG CTGGCATATG CGCCCTTCCG CGCGCTCTAC
TCCTACGGCA CGCGCTGCGC CGACCGGGCA ATCGCCACCG ATGCCTGCAC ACAAGACGAT
CTGCCGCGAT ATCTGGGGGT CGATCCGGCG AAGGTCGTGG TCATTCCCAG CGCCATCGAC
GCCGATGAGT GTCTGGCGCC GGTCAACGAC GCCACGCGCG CTGCGTTGCG CCAGCGATTT
CGTCTCGATG AGGAGGACCT GACGATTCTC AGCGTTGGTC GGCTGGAGCG CAACAAAGGA
TACCATATCC TGATCGACGC ACTCACCCGG CTGCGGGAGC GTCTGCCATC GCGCTGGCGC
TGGTTGCTGG TGGGAGAAGG GAAGGAGCGT CGCGCGCTCG AACGCCAGGC GCAACGGGCT
GGCATCATCC ATCACGTTAC CTTCGTGGGG CGGCTCAGCG ACGCCGAACT GCACAACCTT
TACGAAGAGG TCGATCTGGT CGTTCACCCG ACGCTCTACG AGGGCTCCTC ACTCGTAACG
CTGGAAGCCA TGATCCACCG CCGTCCGATA GTCGCATCGG TAGCAGGCGG CATTCCCGAT
AAGGTCTTCA ATGGGCGCAA CGGGTATCTG GCGCGTCCCG GCGATGCCGA TGATCTGGCA
TCCCGCATAC GGCTGGCGCT GGAACAGCGC GATCGCTGGG CAACATGGGG TGCAGAGAGC
GTTCGCCTGG TGCGCGAGAC CTTCGACTGG CCCGTGGTGG CGCGCCGGAC GAAGCAGGAG
TATGAGGTGA TGGTTGGGGG GCGAGGGGAG AGGCGAGAGG CGAGAGGGGA GGGGCATGAG
GCGAGAGGCG AGAGGGGTGA GGCGAGAGGG GCGAGGGGCC CGACAATGGC GTAG
 
Protein sequence
MHDFSPDALR VAMLARVVFP LHGFGGIERH VFHLTTHLAR LGVRITLYVQ TPHGHTLDLD 
DDPARPINPY ADVLPGIERV MTLRYDYTSP ALRPNSIAGR QINYPWYSWR LGRIAAAAAR
RGAYDVVHAQ GLCAFGYGWI RVRDPLLRRV PFIANPHGLE EYRTPDWRKW LAYAPFRALY
SYGTRCADRA IATDACTQDD LPRYLGVDPA KVVVIPSAID ADECLAPVND ATRAALRQRF
RLDEEDLTIL SVGRLERNKG YHILIDALTR LRERLPSRWR WLLVGEGKER RALERQAQRA
GIIHHVTFVG RLSDAELHNL YEEVDLVVHP TLYEGSSLVT LEAMIHRRPI VASVAGGIPD
KVFNGRNGYL ARPGDADDLA SRIRLALEQR DRWATWGAES VRLVRETFDW PVVARRTKQE
YEVMVGGRGE RREARGEGHE ARGERGEARG ARGPTMA