Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1203 |
Symbol | |
ID | 5538669 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 1555648 |
End bp | 1557513 |
Gene Length | 1866 bp |
Protein Length | 621 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640893335 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001431318 |
Protein GI | 156741189 |
COG category | [M] Cell wall/membrane/envelope biogenesis [V] Defense mechanisms |
COG ID | [COG0845] Membrane-fusion protein [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTACCA CTCCTGCGCG TCGCTGGCCC GGTCGGCGCG CAATCGTCAC CGCAATCGGA CTTGTGCTCA TCGTGGCAGC GTGCGCTGCG GGCATCTTTC TCTTTCGCGG CGGGCAACCG GCGCCGGCGC GCAGTTATGC GTTGGTCAAT CCGCGGGTTG ACACGCTGAT TGCGACAGTC AACGCGACGG GACAGATCGC TCCGGTTCAG ACGGTCAATC TCAGTTTTGC GGTGACCGGG CGAGTCGCTG AGGTGCTGGT GCGCCCCGGC GATGTGGTGG AAAAGGGGCA ACCACTGGCG CGACTCGATA CGCGCGAACT GGAACTGCGT CTGACACAGG CGGAGGCGCA ACTGGCGCAG GTGCAGGCGA ACCTCGACCG CCTGCTCGCC GGTCCTTCAT CGGCTGAGAT TGCTGCCGCC GAAGCGCAAC TCGCACAGGC TGCGGGCCAG TTGCGGCAGG TGGAAGGGAG CGTCACAACT GCGGATATGC GCGCTGCCGA GGAACAACTG CGGCAGGCGG AAGCGCGCCT CAATCAGTTG CTCAACGGTC CGCGCGAATC GGACGTTCAG ACCGCAGAAG CGCGCATCCG CGAGGCCGAA CTGAATCTGG AACGTCAGCG CGCCCAACTC TCCGCTGCGA AAACCAACGC ACAGATTCAA CTGGAGCAAG CGGTCAACCA GTTGACCCAG GCACAATCGC GCTACTCAAC GGCGAAACAG AACTGGGAGT ATGTGCGCGA AACCGGCGCC GACCCGATTG TGCGCACCGT AGCCGATCCA AACCGACCGG GACAGACCCG CCCGAACATT CTGAACGACT CGCAACGCCA GCAGTACTAC GACGCCTTCG TTCAGGCGGA AGCGGCGCTG CGCAGCGCTG AAAACGCTGT TGCTCAGGCG CAGGTGAATT ATGACAACGC GCGTCTGGCA GAGGCGAACG GAGTCGAACT CGCCGAAGGT CAACTGGACG TCGCGCGCGC GAACCGTGAT CTCCTTTTCG CCACCCCTGA ACCAGACGTG CTCGCAGCGG CGCGCGCGCA GGTTGCCAGC GCCCGCGCTG CGCTCGACCG AATGCGCGGC GATCAGCGTG GGGGTCAGCT TGAAGCAGCG CGCGCCGCCT TCGAGGCAGC AAAGGCAAAC CTGGAACGAT TGCGCGCCGA TCCGCGCCCG GCCGACCTGG CAGCTGCCCG CGCACAGGTC GATGGCGCGC GCGCCGCGCG CGATCTGGCG CGACTGACCC TTGACGAAGC GGTGCTCAAA GCGCCGTTCA GCGGAGTTGT TGCCGAGGTC AACCTGAAAG TAGGGGAAGC GCCATCGCCG GGACGTCCTG CGATTGTGCT CGCCAATCTC GAGCGTTTTT ATGTCGATGT GACGGTGGAC GAGATCGACA TTACGCGGGT CAGCGTCGGT CAACCGGTGA CGCTGACGCT CGATGCGTTG CCAGAGGTGA CCCTGGCAGC AACAGTCGAG ACGATTGGAC CACTCGCGCT GCCGCAGGCG GCGGTCACTT CGTACCAGGT GCGAATCGGC ATTCCCAACA CCGACCCACG GGTGCGCGCC GGCATGTCGG TCGGCGCAGA CATTGTGGTC GCGGAGCGTG AGAATGCGCT GCTGGTGCCC CGCCGCGCGG TGCGCAACGA TCGCGGGCGC CTGATCGTCG ATGTGGTGCG CGATCCGGGA TTGTGTGCGA CGCCGCCAGA GCAGCGCCCC GCGCGTCCCG ATCTCGAAGC ACGGGAAGTG ACCGTCGGGC TGAGCAACGA CCAGGCTATC GAAATCCTCA GCGGTCTCGA TCCGCAGGTC TGCGTCTATG TCGAAGGCGT CGATCAACGC TTTACGTTCT TCACCGGTCC GCCTCGCGCG CGGTAA
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Protein sequence | MTTTPARRWP GRRAIVTAIG LVLIVAACAA GIFLFRGGQP APARSYALVN PRVDTLIATV NATGQIAPVQ TVNLSFAVTG RVAEVLVRPG DVVEKGQPLA RLDTRELELR LTQAEAQLAQ VQANLDRLLA GPSSAEIAAA EAQLAQAAGQ LRQVEGSVTT ADMRAAEEQL RQAEARLNQL LNGPRESDVQ TAEARIREAE LNLERQRAQL SAAKTNAQIQ LEQAVNQLTQ AQSRYSTAKQ NWEYVRETGA DPIVRTVADP NRPGQTRPNI LNDSQRQQYY DAFVQAEAAL RSAENAVAQA QVNYDNARLA EANGVELAEG QLDVARANRD LLFATPEPDV LAAARAQVAS ARAALDRMRG DQRGGQLEAA RAAFEAAKAN LERLRADPRP ADLAAARAQV DGARAARDLA RLTLDEAVLK APFSGVVAEV NLKVGEAPSP GRPAIVLANL ERFYVDVTVD EIDITRVSVG QPVTLTLDAL PEVTLAATVE TIGPLALPQA AVTSYQVRIG IPNTDPRVRA GMSVGADIVV AERENALLVP RRAVRNDRGR LIVDVVRDPG LCATPPEQRP ARPDLEAREV TVGLSNDQAI EILSGLDPQV CVYVEGVDQR FTFFTGPPRA R
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