Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1195 |
Symbol | |
ID | 5538661 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 1543595 |
End bp | 1544404 |
Gene Length | 810 bp |
Protein Length | 269 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640893327 |
Product | anti-sigma-factor antagonist |
Protein accession | YP_001431310 |
Protein GI | 156741181 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [COG2172] Anti-sigma regulatory factor (Ser/Thr protein kinase) |
TIGRFAM ID | [TIGR00377] anti-anti-sigma factor |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.123525 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAACG CCCCACCGCA GCGGCGCATG ATGCGCACAG TCTGCGCTCA CCGCCTGATG ACTGGCATTC CGATGGAATC TTTGACGGTC CCGGCTACCC TTGAATCGCT GGCGCAGATC AGCGCCTTTG TCGGAGAAGC GACGCAACGC GCTGGTCTCG ACGAGCACGC CGCATGGCAG GTCGAACTGG CGGTGGATGA AGCGGCAACG AATATCATTC AGCATGGGTA CGATCCCGGC AAGCCGGGCA TCATTGAACT GACATGGCGG ATCGAGAACA ACCGCCTGAT CATCACGCTG CGCGACTATG GACGGCGCTT TAATCCCGAC GATGTGCCGC CGCCGGATCT TTCATCGCCG CTGGAGGAGC GGCAGCCCGG CGGACTGGGA CTCTATCTGA TGAACCGCTT GATGGATCAG GTGCGCTTCG ATTTCGACGA CGCCAACGGC AATCTTCTGA CGATGGTGAA AGAGATTCTG CCACGTGTGC AGGCGCACGA GTTCCGATTG AGCGGCAGGC TTGATGCGGT TGGAACAGCG ACGGCGCTTG CGCCGGTGCA TCGGGCGATT GCCGATGGGG CGGAGTATGT CTTGCTCGAT TTCGATGATG TGACGTTTCT TAGCAGCACG GCACTGCGTT CGCTGTTACT CGCGCGCAAA GAGTTGTTGG AGCGCAACGG TGAACTTCGC CTCTGTAATC TGCGCCCACA GGTGCGTGAG GTGTTCGAGT TGACCGGCTT CACCCGGATT TTTGCCATTC ACTCCTCGCG CAATGAGGCG CTGGCGGCAT TCGGTCAGGA ACACGCGTGA
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Protein sequence | MSNAPPQRRM MRTVCAHRLM TGIPMESLTV PATLESLAQI SAFVGEATQR AGLDEHAAWQ VELAVDEAAT NIIQHGYDPG KPGIIELTWR IENNRLIITL RDYGRRFNPD DVPPPDLSSP LEERQPGGLG LYLMNRLMDQ VRFDFDDANG NLLTMVKEIL PRVQAHEFRL SGRLDAVGTA TALAPVHRAI ADGAEYVLLD FDDVTFLSST ALRSLLLARK ELLERNGELR LCNLRPQVRE VFELTGFTRI FAIHSSRNEA LAAFGQEHA
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