| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1174 |
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| Symbol | |
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| ID | 5538640 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 1518896 |
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| End bp | 1520263 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640893306 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001431289 |
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| Protein GI | 156741160 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.273661 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.401546 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGATGT GTCATTCTCC GCATGACCAT CTTCACAATC CGAAAGGCAG GGAAGCTATG
TTCACGACAA AGTGGTTGAA ACTGTTCGGC GTCTTTTCGA TTCTCGCGCT CGTGCTGGCT
GCCTGTGGCG GCGCACCGGC GACAACTCAG CCCACTGCCG CCCCGGCGCA ACCAACGACC
GCACCGGCGC CGACCGGCGG CGGTAAACTC GAAATCTTCA GTTGGTGGAC AAATGGCGGC
GAAGCCGATG GGCTGAACGC CATGTTCGAC ATCTACAAGC AGCAGAATCC TGGCATCGAA
ATTGTGAATG CCACTGTCGC CGGGGGCGCT GGCACGAATG CCAAGACCGT ACTGAAGACT
CGCCTTCAGG GTGGGCAACC GCCGGATAGC TGGCAGGTGC ATGCTGGCAA GGAATTGACG
GCATATGTCG ATGCCGGTCA GATGGAACCG CTGACGCAGT TCTTCAAGGA GCAGGGCTTC
GACAAGGTCA TGCCGCCGAA ACTGCTCGAA CAGATCACCT ACAACGGTGA AATCTGGTCG
GTGCCGGTCA ATATCCACCG ATCGAACGTT CTCTGGTACA ACATCAAGAT TTTCCAGGAG
AACGGTCTGA CCCCGCCCAA GACTATCGAC GACTTCTTCA CAGTGGCTGA GGCGCTTCAG
GCGAAAGGCA TCATTCCGCT CGCAGTCGGC GGCAAAGACA AGTTCGAGAC GCCGCACCTG
TTCGAGAGCG TGCTTCTGGC GGTCTTTGGA CCGGACGATT ACGCGAAACT GTTCCAGCCC
GGCGCCGACT GGAGCGATCC GCGTGTTCGC CAGGCAGCCG AGATTGCGAA ACGAATGTTG
GAGTACTCCA ACAGCGACCG CTCGTCGCTG GGATGGGCGG ATGCCGCACA ACTCGTGCTC
GACGGCAAGG CGGCCATGAC CATTATGGGC GACTGGGCGC ATGGCTACTT CATCAGCAAG
GGCGCGAAAG TCGGTGTTGA CTATGGCTAT GCCGCAGCGC CGGGCAACGA CGGCGTCTTC
ATGTGGCTGT CGGACAGTTT TGGTCTGGCG AAGGGCGCGC CGAACCCGGA GCAGGCGAAG
GCATGGCTGG CGCTCTGCGG CTCGCGTGAG GGGCAGGACG CCTTCAACCC GAAGAAAGGG
TCGATCCCGG CGCGCACCGA TGCGAATGTG AGCCTGTACG ACGAGTATCT CCAGTACTCG
ATCAAAGCCT TCGGCAGCGA GAAACTGGCG CCGAGCGTTG TTCACGGCGC GGCTGCTCCT
GAAGCGTATA TGACCGAGTA CGGCAATGCC CTGAACGTCT TCGCCAGCGA CCTCGACGTT
GATGCGGTCG TCGAGGCGTT GCAGGATGCT GCGAAAGACC TGAAGTAA
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| Protein sequence | MVMCHSPHDH LHNPKGREAM FTTKWLKLFG VFSILALVLA ACGGAPATTQ PTAAPAQPTT
APAPTGGGKL EIFSWWTNGG EADGLNAMFD IYKQQNPGIE IVNATVAGGA GTNAKTVLKT
RLQGGQPPDS WQVHAGKELT AYVDAGQMEP LTQFFKEQGF DKVMPPKLLE QITYNGEIWS
VPVNIHRSNV LWYNIKIFQE NGLTPPKTID DFFTVAEALQ AKGIIPLAVG GKDKFETPHL
FESVLLAVFG PDDYAKLFQP GADWSDPRVR QAAEIAKRML EYSNSDRSSL GWADAAQLVL
DGKAAMTIMG DWAHGYFISK GAKVGVDYGY AAAPGNDGVF MWLSDSFGLA KGAPNPEQAK
AWLALCGSRE GQDAFNPKKG SIPARTDANV SLYDEYLQYS IKAFGSEKLA PSVVHGAAAP
EAYMTEYGNA LNVFASDLDV DAVVEALQDA AKDLK
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