Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1141 |
Symbol | |
ID | 5538607 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 1478382 |
End bp | 1479719 |
Gene Length | 1338 bp |
Protein Length | 445 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640893273 |
Product | integral membrane sensor signal transduction histidine kinase |
Protein accession | YP_001431256 |
Protein GI | 156741127 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4585] Signal transduction histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.697723 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGAAATC AGGCGTCGCC ATGTTCATCA CAGGGTCGAA AGCCCAGAAC CGGAGCCTTC GGTGCGCTCT TCGATGCATT GCGCGCGTGG TGGCGCGCAA TGCTGCCGGG CCGTGTGATG ATCGTCGCGG TGGTCATGAT TGTCGGCGCG CTGATCGCCG CCGTCACTGC GCAGCCTGAT GCTCCGCTCT GGAAGCGAGG CGTGGTGGTC GGTGCGCTGA GCATACTGTT GGCGCTGAAC CTGATCCCGC CTTTGTCCGA TATTCGCCCG CGTTCAACGC CTCCGATCCA GACGGCGATC TATCTGATGC TTGCAAGTGC GCTCTACTTC GTTGCATTTA GCCTGAGCAG CGGAGCGGCG AGCACCGTCA TTTCGATGCT CCTGTTCTTG CTGGTTGGAC AGGCGACATG GACGCTGCCG CTGGCAACAG CGCTCATCTA TGCTGGCGGC ATGATGATCG GCGTGTGCGG GATGATCGCC TTCTTCGTCG GCCTGGAGGT GGCGCTTCAA AGTGCTGCAA CGTTCAGTTT TGGCGTTGTG TTTGTGACGA TGTTCGTCCG GCTTTCCCAG CGGTACGAAC AGCAGACGGA GCAGGCTGAG GCGCAGCGCG CGCGTGCCGA GGAATTGCTG GCACAGTTAC AGGCGAGCCA CGACGAACTG CGCGCGGCGC GCGAACGCGA ATTGAAAATG GCAGCAATTG AAGAGCGGGT GCGGTTGGCG CGCGATATTC ACGATGGGCT TGGCCACTAT CTCACCATCC TGAACGTTCA GTTGCAGGCG GCCTCACGCC TGCTCCAACG CGACCCGGAA CGCGCCGCCG CGGTGATCGT CACGTGCCGC GAAGTGGCGC AGACAGCACT CGACGAGGTG CGGCGCAGCG TCGCCGCCAT GCAGCCGTCG CCGCTCGACG GTCACTCGCT CGATGTGGCG ATTGAACGTC TTATCGATGA CTTCCGTCTC TCGACCGCCA TCGATGTTCG CTTCGTGCAG GCAGGCGATC TGCCAGCGTT GCCGCAGACG CTAGCGATGA CCCTGTACCG CGCCGTGCAG GAGGGATTGA CCAATGCCCG CAAACATGGC AATGCCTCGC AGATTGATGT CACGCTGACA TTTCTGCCGG AAACCGCGCG CCTGACGATT CGCGATAATG GTCAGCCAAA CAATGGCGCG CACGAAGGCG GCGGTTTCGG ATTGACCGGC TTGCGCGAAC GGATTGAGCG GTTGGGAGGC GTGTTGCGCG CCGGTCCTCT GCCCGAAGGC GGTTTTCTGC TCGATATCAT TGCGCCTGTG GCGCGCGCGA ACGAGGTCCA TTATGATCCG GGTGTTGCTG GTCGATGA
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Protein sequence | MGNQASPCSS QGRKPRTGAF GALFDALRAW WRAMLPGRVM IVAVVMIVGA LIAAVTAQPD APLWKRGVVV GALSILLALN LIPPLSDIRP RSTPPIQTAI YLMLASALYF VAFSLSSGAA STVISMLLFL LVGQATWTLP LATALIYAGG MMIGVCGMIA FFVGLEVALQ SAATFSFGVV FVTMFVRLSQ RYEQQTEQAE AQRARAEELL AQLQASHDEL RAARERELKM AAIEERVRLA RDIHDGLGHY LTILNVQLQA ASRLLQRDPE RAAAVIVTCR EVAQTALDEV RRSVAAMQPS PLDGHSLDVA IERLIDDFRL STAIDVRFVQ AGDLPALPQT LAMTLYRAVQ EGLTNARKHG NASQIDVTLT FLPETARLTI RDNGQPNNGA HEGGGFGLTG LRERIERLGG VLRAGPLPEG GFLLDIIAPV ARANEVHYDP GVAGR
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