Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1138 |
Symbol | |
ID | 5538604 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 1474080 |
End bp | 1475144 |
Gene Length | 1065 bp |
Protein Length | 354 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640893271 |
Product | ribosomal small subunit Rsm22 |
Protein accession | YP_001431254 |
Protein GI | 156741125 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG5459] Predicted rRNA methylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.169783 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGGCGT GTTCGCACGC ATCTATTCCA GAGGTCTCCC GACTCTTTAT GATCGAACGT CTGCCGCCTG ATCCGCGCAT GATTGCGCTC CCTGCCGAGT TGCGTAACGC TATCGCGCAG GCGCTCGACC GTGTTCCCGC AATCCGCTGG ATGACCGCAG CGCGCACGTT GAGCGAGCAG TACCGCGCCC TCGATGACAT TGGCGCAGCG CCGGCAGTGC GCACGCATCT CGATGCCCTT GGCTATGCTG CGCTCTTCAT GCCGGCCACG TATGCGCAAC TATACGGTGC GATGAAAGCG GCTGCCGAGC GCATCCCATC GTGGTCGCCG GAAACCATGC TCGATATGGG GAGCGGACCC GGAACGGCGC TCTGGGCAGC AACGGTGTGC TGGCCGTCGC TCCGCGACCT GACCGCCTGG GAGCGCGAGC CGGTGTTGAT TGCGCTGGGG CGCAATTTTG CGCATACGAG CGCAAATCCG GCGCTGCGGA GCGTGCGTTG GGTGCAACGC ACCCTGCAAG CCCCTATCGA ACGCGGCATC CGGTTCGATC TGGTTGTGCT CGGTCACGTG CTTGGCGAAA TACCACCGGA TGAGCGCAGT GCGATTGTGG AAACCGCCTG GCGCCTGAGT CGTGGCATGC TCCTGATCGT CGAACCTGGC ACTTCGGTTG GGTTTGCCGT GGTGCGCGCC GCGCGCGACC TGTTGCTCGC CAACGGCGCC GCCACGATTG CACCCTGCAC CCACGATCAG CCCTGCCCGC TCACCAACGA CTGGTGCCAC TTTCCGCAAC GACTGCGCCG TCCTGAGTTT CAGCGGCGCG CGCGCGGCGC GTCGTCGCCG TGGGAAGACG CCAAGTACAG TTATGCTGCG CTCACCCGCT TTCCGCCCGA ACGACCGGTC TGGGGCAGGG TCATTCGCGA ACCGACGTTC AACAAGGCGT ATGCCGAAGT CCTGATCTCA TCGCGCGACG GTATTCTGCG GCATCGCGCG CTCAAACGCG ATCGCGACGC CTTCAAATGG GTCAAGCATC TTGAATGGGG ACAGACACTC GAGGAGCAAC CATGA
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Protein sequence | MKACSHASIP EVSRLFMIER LPPDPRMIAL PAELRNAIAQ ALDRVPAIRW MTAARTLSEQ YRALDDIGAA PAVRTHLDAL GYAALFMPAT YAQLYGAMKA AAERIPSWSP ETMLDMGSGP GTALWAATVC WPSLRDLTAW EREPVLIALG RNFAHTSANP ALRSVRWVQR TLQAPIERGI RFDLVVLGHV LGEIPPDERS AIVETAWRLS RGMLLIVEPG TSVGFAVVRA ARDLLLANGA ATIAPCTHDQ PCPLTNDWCH FPQRLRRPEF QRRARGASSP WEDAKYSYAA LTRFPPERPV WGRVIREPTF NKAYAEVLIS SRDGILRHRA LKRDRDAFKW VKHLEWGQTL EEQP
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