Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1126 |
Symbol | |
ID | 5538592 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 1459861 |
End bp | 1461105 |
Gene Length | 1245 bp |
Protein Length | 414 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640893260 |
Product | hypothetical protein |
Protein accession | YP_001431243 |
Protein GI | 156741114 |
COG category | [V] Defense mechanisms |
COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCTTG TTGAAACCAT CCGCATTGCC CTGAGCAGCC TGTCTGCCAA TAAATTGCGC TCGGCGCTGA CGATGCTCGG CATTATTATC GGTGTCGGCG CGGTAATCAC GCTCCTCGCG CTCGGCGGCG CCATTCAGAC GCTGGTCACA CGCGAGTTGC AGGGGTTGGG ATCGAACCTG GTCTTTGTGT TTCCCGGCAC CAATGATCCT GAACAGAACC GGCGCGTGCC GCCGCGACTG ACGAACGAAG ATGTCGCCGC CCTTGCCGAT CCGCTCAATG TTCCGGCTGC CGCAGCCGTG ACGCCGCAGT TGACCCGGGG GGCGCTGATC GTCTACGCTG GCGCCGGTTT CGATGGGCGC GTCGCTGGGG TGACACCGAA TTATCCGCAG GTGCGCAATG CCCGGGTGGT CAGCGGGCGC TTCTTTGATC AGACGGAACT CGATCTGCGC TCGCGCGTTG CGGTTATTGG CGCCGATGTG CGCGCGTCGC TCTTTCCCGA TGAAGACCCG ATCGGGAAGC GCATCCGCAT CAATGATGTC AGTTTCGAGG TCATCGGCGA AATGGCGCCG CGCGGCGGCA ACTTCGGTCC CAGTGAAGAT AATCTGGTGT TCGTGCCCAT CACGACGGCG CAGACGCGCC TGTTTCCGCC ACCGCCCGGC GCAGTAAGCC GAATCGACGT CAGCGTGGTC TATATCCAGG CGGTCGATGA GCGCCGCATT GATGACGTGA TCGATCAGGT AACGGAGGTG CTGCGCCGTC GTAACGGGTT GACCTTTCAG GACAACAATT TTACGATTGT GACGCAACAA GACCTGATCG CGTCGTTCGG CACAATTACC GGCGCGCTGA CGGCATTTCT TGGCGCAATT GCGGCAATCT CGTTACTGGT CGGCGGGATT GGCATTATGA ACATCATGCT CGTTTCGGTG ACCGAGCGCA CCCGCGAAAT CGGGCTGCGC AAAGCGGTCG GCGCGCGGCG GCGCGACATC CGCTTTCAGT TTGTCATCGA GGCGACCATG CTGAGTCTCC TTGGCGGATT GCTCGGTATT GCGCTCGGCT ATGCGCTCTC GGCGCTGGGA ACGGCGCTGC TGCAAGGGGT CGCGGAAGGC GCTGAGGCGC GGGTGCAACT TGATGCCATC TTGCTCGCTA CGCTGACGTC GATCGCGGTC GGACTAATCT TCGGCATTTA TCCCGCCGTG CGCGCGTCGC GCCTCAATCC GATCGATGCG CTCAGGTATG AGTAG
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Protein sequence | MNLVETIRIA LSSLSANKLR SALTMLGIII GVGAVITLLA LGGAIQTLVT RELQGLGSNL VFVFPGTNDP EQNRRVPPRL TNEDVAALAD PLNVPAAAAV TPQLTRGALI VYAGAGFDGR VAGVTPNYPQ VRNARVVSGR FFDQTELDLR SRVAVIGADV RASLFPDEDP IGKRIRINDV SFEVIGEMAP RGGNFGPSED NLVFVPITTA QTRLFPPPPG AVSRIDVSVV YIQAVDERRI DDVIDQVTEV LRRRNGLTFQ DNNFTIVTQQ DLIASFGTIT GALTAFLGAI AAISLLVGGI GIMNIMLVSV TERTREIGLR KAVGARRRDI RFQFVIEATM LSLLGGLLGI ALGYALSALG TALLQGVAEG AEARVQLDAI LLATLTSIAV GLIFGIYPAV RASRLNPIDA LRYE
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