Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1100 |
Symbol | |
ID | 5538566 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 1423980 |
End bp | 1425437 |
Gene Length | 1458 bp |
Protein Length | 485 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640893234 |
Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
Protein accession | YP_001431217 |
Protein GI | 156741088 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.117199 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTTGCGAC TGGACGAAGT GCTGCCCGGC GTGCAGGAGG AGGTCAATCG GCGCATCCAT GCGCTGCCTC CCGCGTTGAT GCAGGTCGCC TTTAGCGAAG CAGTAATCGA TTCGCGTCTG GCGACGTCGG AGTGCCTGTT TGTCGCATTG CGCGGCGAAC GGGTCGATGG CCACGAATTT CTGGCGGACG CGGCGGCGCG TGGCGCGCGC GGCGCTTTAG TGCGCCGCAG CAAAGTGTCG AGCCTGACGC TCGAACGCCC TTATGTGGTG ATCGATCCGG TTACCGGTGA GGGTCTCGAA CGGGCGACGC CCGACACGAT GCTGTTGATC GCTGTCGATG ATCCGCAGGC GGCGCTGAAC CGGCTGGCCG CCTATCACCG GGGGATGTAC AACCCCGTCG TGATCGGCAT CACCGGGAGC GTGGGCAAAA CCTCGACGAA AGAGGTGACC GCCGGCGTTC TTCAGCGCAG CTTTCGCACC TTAAAAAGCC CAAGAAGTTA CAACAGCGAG GCGACATTGC CCATCGTGCT GCTTAAACTT ACCGCCGACC ATCAGGTGGC AGTGCTCGAG ATGGGTATGT ACGGGCCGGG CGAGATCGCG CATCTTGCGG CTCTCGCCCG ACCACGCCTC GGCATCGTCA CGAATGTGGG ACCATCGCAC CTTGAGCGTA TGGGAAGCAT CGAAGCCATT CAGCGCGCCA AAAGCGAACT GCCGCAGGCG TTGCCGGAGG ATGGGTTCGC CATCCTCAAC ATCGACGATC CGCGTGTGCG TGCGATGGCG GAGGTGACGC GCGCCCGACC GTTTTTCTAC GGTCTCGACC CGGCAGCCGA CCTGTGGGCG GACGCGATCG AGAGCCGCGG TTTGCAGGGC GTCAGTTTTC GGGTGCATTA TCAGGGGGAT GGTTTGCATC TGACGCTGCC GTTGTTGGGG CGGCATAGCG TGCATACAGC GCTCGCGGCT GCTTCCGCCG GGTTGTTGCT TGGCATGGAA TGGGAAGCGA TCATCGCCGG GTTGCGTAGC GAAGGCGCCC AACTCAGGCT ACTGGCAGTT CCGGGCATCA ACCAGACGAC GCTGATCGAC GACACGTACA ACGCCTCGCC TGCCTCGATG CAGGCAGCGC TCAACCTTCT GGCAGAACTC GATGGTCGGC GGATCGCCAT CCTGGGCGAT ATGCTGGAGT TGGGGAGCAT CGAGGAAGAG GCGCACCGCA TGGTCGGGGC GCGGGCGGCG GAAGTGGCGC AGATTCTGAT CGCTGTCGGG CAGCGCGCGC GCTGGATTGC CAATGAGGCG CAGCAGGCGG GATTGCCCGC TGATCAGGTG TACGCGGTTG ACGACAATGA TGCAGCGGCG CACCTGGCGC GCAACCTGCT TGCACCTGGC GACTTTGTGT TGATCAAAGG GTCGCGCGGC ATGTTTATGG AAACGATTGT GTCACAGTTG CAGGCACATC GTCCATAA
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Protein sequence | MLRLDEVLPG VQEEVNRRIH ALPPALMQVA FSEAVIDSRL ATSECLFVAL RGERVDGHEF LADAAARGAR GALVRRSKVS SLTLERPYVV IDPVTGEGLE RATPDTMLLI AVDDPQAALN RLAAYHRGMY NPVVIGITGS VGKTSTKEVT AGVLQRSFRT LKSPRSYNSE ATLPIVLLKL TADHQVAVLE MGMYGPGEIA HLAALARPRL GIVTNVGPSH LERMGSIEAI QRAKSELPQA LPEDGFAILN IDDPRVRAMA EVTRARPFFY GLDPAADLWA DAIESRGLQG VSFRVHYQGD GLHLTLPLLG RHSVHTALAA ASAGLLLGME WEAIIAGLRS EGAQLRLLAV PGINQTTLID DTYNASPASM QAALNLLAEL DGRRIAILGD MLELGSIEEE AHRMVGARAA EVAQILIAVG QRARWIANEA QQAGLPADQV YAVDDNDAAA HLARNLLAPG DFVLIKGSRG MFMETIVSQL QAHRP
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