Gene Rcas_1061 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1061 
Symbol 
ID5538527 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1377837 
End bp1378829 
Gene Length993 bp 
Protein Length330 aa 
Translation table11 
GC content59% 
IMG OID640893197 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_001431180 
Protein GI156741051 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGCCC ATAGCGATGT TCTCCTCGAA GTTCGAGGGT TGAAGACCTA CTTTTATACT 
GAAGCCGGTG TCGTGCGCGC GGTCGATGGT ATCGATCTGA AGGTGCGTCG CGGTGAGGCG
CTTGGTATCG TCGGCGAAAG CGGGTGTGGC AAGAGCGTGA CGTCGCTCTC GATCATGCGC
CTGATCCAGG ACCCTCCCGG ACGAATCGTC GAGGGTGAGA TTATTTTCGA TGGCATGAAT
ATTCGCTCGC TCAGCGACGA GGAGATGCGT CATATTCGCG GTAATCGCGT CTCGATGATT
TTCCAGCAAC CAACCACGTG TCTCAATCCG GTGTTTAAGG TCGGTGATCA GATCATCGAG
GCGCTCGAGA TTCATCAGGG GTTGCGCGGC GAAGAGGCGC GCAGACGCGC GGTTGAACTC
TTGTCGCTCG TCGGTCTTCC CGACCCGGAA CGGCGCATCA ATCAGTATCC GCACGAATTG
TCGGGTGGGC AGGCGCAGCG TGTGATGATT GCCATGGCGC TGGCATGCAA TCCCGAACTC
CTGATCGCCG ATGAGCCGAC GACGGCGCTC GATGTGACGA TTCAGGCGCA GATTCTTGAC
CTCATGCGCG AATTGCGCGA AAAGATCAAT ACGGCGATCA TTCTGATCAC CCACGATATG
GGGGTGGTCG CCGAAATGGT CGATACCGTC GCAGTGATGT ACGCCGGGCA GGTCGTCGAG
TATGCCGATG TGCGCAGTAT CTTCGCCGAG CCGAAGCATC CCTACACCCA GGGGTTGCTG
GCGTCGATCC CGGTCCTTGG CGAAATCGTC GATGAACTGG CGACCATTCC CGGTACGGTG
CCAAGCCTGA TCAATCCGCC AACCGGGTGT CGCTTCGCCG ACCGCTGCGC ACAGCGGTTT
GCGCGCTGTG ATGAGCCGCC GCCGATGTTC ACCCTGAACG GTGGGCGGCA GGTGCGCTGC
TGGCTGTATG CGCCCGATGC GCAACCTGCT TGA
 
Protein sequence
MAAHSDVLLE VRGLKTYFYT EAGVVRAVDG IDLKVRRGEA LGIVGESGCG KSVTSLSIMR 
LIQDPPGRIV EGEIIFDGMN IRSLSDEEMR HIRGNRVSMI FQQPTTCLNP VFKVGDQIIE
ALEIHQGLRG EEARRRAVEL LSLVGLPDPE RRINQYPHEL SGGQAQRVMI AMALACNPEL
LIADEPTTAL DVTIQAQILD LMRELREKIN TAIILITHDM GVVAEMVDTV AVMYAGQVVE
YADVRSIFAE PKHPYTQGLL ASIPVLGEIV DELATIPGTV PSLINPPTGC RFADRCAQRF
ARCDEPPPMF TLNGGRQVRC WLYAPDAQPA