Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1037 |
Symbol | |
ID | 5538503 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 1354244 |
End bp | 1355698 |
Gene Length | 1455 bp |
Protein Length | 484 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640893176 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_001431159 |
Protein GI | 156741030 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAACCTGC TGCTTATCAT TCTGACAATA ATCATTTTGA CGGCAACCGG CATGTACGTA TTGGTGCAAG ACTGGCGCGC GCTTGCCAAT CGGCTGTTCG TCTTCTTCGT TTTCGTCGCT ATTGCTTATA TGTGCGTCGC CGTGATGCGT CTGGCAAGTC AGAGCTGGGA AGAAATATGG TTTTTCCATG GTTTGACTGC GCCGTTGCTT GCTATTGATG CATGGTTGCT GATCTGGCTT ATTCTGGCGA TTTTCATGCC GCATCTTTAC GTCCGGCGCG GGATACGATG GCTTCTGGCG ATGCCATATC TGATCATGAC GCTGTTTCTG TTGCTGGACT GGTATGCCGG TTTTGGGTTG GTCAGAATCT CGGATGGTTT GGAAGAAGGC GGTCGTCTGT TCTTCCCGGT GGGACCGATA TTTGCTCCAA TCGTGGCGCT CTATACGTTA GGAGGCATGC TTGCGCCGAT CATTATGCTG TTGTCCGTCA TTCGTCAGAA TCGCCAGGCG CTGCACCCGG CTCTGTGGCT GTCGGGCGGA ATTATGTTAT CTTTCGTCGC AGGCGCGTTT TTCGGTGAAC TTTCGTTTAC GGGATTAAGT TACGTCAGTA TGCTTCCACT TTATCTGGCG TTCGGTTGGG TGACATTGCG CTACCAGGTG TTTCGCCCCT CGAGTGTGGC GTTGCGCACT GCTGTCGAAC ATCTGCCGGA TGGGATCGTG GTGCTCGACA CGCAACGACG GGTGCGCTTC GCTAATCGCG CGGCGCAGCG CCTGGTATCA CTCACCGATG CCGGCGATAT GCCATTTGAG GACGCGCTGG CGCGTGCCGG CTTTAATGAA CAAACGTCTC CTGATGATCG GATCGTCGAT CTGCGGCGCT TCCACCGTGA TGGCGAGGTC GCAACGACGC TGGTGGTATC GGAAGCCGCC ATCGAAGGCG AGCGCGGATC CGCAAGTGTC CTGATTCTGC GCGATATGAC GACGGTGGAA CAACAGAAGG CGGCGCTGGC GGCATCGCGC GCAGCGCTCG AAGAACGTAC CGCAGCGCTG GAATGTTCGC TGAAGGAGAT TCAGGAGCGA GACGCGCTGA TTACCCGCCT GACACTGCCG TTGATTCCGT TGAGTGATGG CGTGCTGGCA ATGCCGCTGA TCGGCGCGTT CGACGGCGCG CGTTGCGAGG CGCTCATCGC ACTGCTGCTG AAGCGGATTG AGGAGCGCAG CGCGCGCGTG GTCTTGCTCG ATCTGACCGG TATCACCGGC TTTGATGAGT CGCTGGCGGC GGCGCTGCGT CAGGCGGCGG ATAGCGCTCG CCTGATGGGG GCGCACATTG CGCTGTGCGG CATTCGTCCC GACATTGCCG AAAGCATCGT CCACGAACGG ATGCACCTGA ACAGCGTGCG CCTCTTTGCG ACGATGCAGG AGGGAGTAGC GGCATTGCTG GGGCACAACC GATGA
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Protein sequence | MNLLLIILTI IILTATGMYV LVQDWRALAN RLFVFFVFVA IAYMCVAVMR LASQSWEEIW FFHGLTAPLL AIDAWLLIWL ILAIFMPHLY VRRGIRWLLA MPYLIMTLFL LLDWYAGFGL VRISDGLEEG GRLFFPVGPI FAPIVALYTL GGMLAPIIML LSVIRQNRQA LHPALWLSGG IMLSFVAGAF FGELSFTGLS YVSMLPLYLA FGWVTLRYQV FRPSSVALRT AVEHLPDGIV VLDTQRRVRF ANRAAQRLVS LTDAGDMPFE DALARAGFNE QTSPDDRIVD LRRFHRDGEV ATTLVVSEAA IEGERGSASV LILRDMTTVE QQKAALAASR AALEERTAAL ECSLKEIQER DALITRLTLP LIPLSDGVLA MPLIGAFDGA RCEALIALLL KRIEERSARV VLLDLTGITG FDESLAAALR QAADSARLMG AHIALCGIRP DIAESIVHER MHLNSVRLFA TMQEGVAALL GHNR
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