Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_0934 |
Symbol | |
ID | 5538400 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 1239605 |
End bp | 1240771 |
Gene Length | 1167 bp |
Protein Length | 388 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640893083 |
Product | RNA-binding S1 domain-containing protein |
Protein accession | YP_001431066 |
Protein GI | 156740937 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0539] Ribosomal protein S1 |
TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000731277 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.167396 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGGCAG TACCCGACAA TGCCGTCCAG GAAACAGAAG ATTTCGATTG GACGCAGATG CTCGACGACT ACGACTATGC GCGTCCGCAA CGCGGCGAGG TGCGCGAGGG CGTGGTCATG AAGATTGAAG ACGGCGGTAT TCTGGTCTCG ATTGGCACCA AGCGCGAAGG GATCATTCCG ATTGCCGACG TGCGCGCTAT CGGCGATGAG GTGTTGAACA ACCTGAAGGT GGGCGATCGG ATTCAGGTGT ACGTTCAGGA CCCGGAGAAT CGCCAGGGCG ATCTGGTCTT GTCGCTGACG ATGGTACAAG TTGCGCGCGA TTGGGAAGAA GCGGCTCGCC TGAGCGCTGA GGGCGGCATT GTGCAGGGCC AGGTTATTGG CTACAACAAA GGTGGCTTGC TGGTACAGTT CAATCGCATT CGTGGGTTTG TGCCGGCATC TCAGGTGGCG CAACTCCATG GACGCACTGC TGCCGAGGAA CGGCAGCAGG CGTTGCAACG CATGGTTGGT CAGACCATCC CGCTGAAGGT GATCGAGGTG GATCGTGATC GCAATCGGTT GGTGCTATCG GAGCGCAGCG CAACGCAGGA GTGGCGCAAG GCGCAGAAGC AGCGTCTGCT TACGGAACTT CAGCCGGGCG ATATTTTGAC CGGGCGCGTC AATCAACTGA CGAACTTCGG CGCATTCATC GATCTCGGCG GCGCCGATGG TCTGGCGCAT ATCTCCGAAT TGTCGTGGCA GCGCGTCAAC CATCCCCGCG AGGTGCTGTC GCCAGGGCAG GAAGTGAGGG TCATGGTCGT GGAGATCGAT GCCGAACGTG AACGCATTGG TCTCAGCCTG CGCCGCCTTC AACCCAATCC ATGGGATACA ATCGATCAGC GCTACTCGCT TGGACAACTC GTGAGCGGTC CGGTGACGAA CGTTGCACCG TTTGGCGCAT TTGTGCAGAT AGAAGAGGCG GTCGAAGGTC TGATCCACGC CAGCGAACTC GACGCCGATC CGCAGGCGCA GCCGCGCGAT CTGTTGCAGC CCGGTCAGAT CATCACGGCC CGAATTATCA GCCTCGATAA GCAGCGCCAG CGTATGGGGC TTAGCCTGCG CCGCAACAGC GCCGATGAAC CGCCGCCGGA GGAGACGCCG GTTGAGGCGC CGTCCACCGA TATGTAA
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Protein sequence | MKAVPDNAVQ ETEDFDWTQM LDDYDYARPQ RGEVREGVVM KIEDGGILVS IGTKREGIIP IADVRAIGDE VLNNLKVGDR IQVYVQDPEN RQGDLVLSLT MVQVARDWEE AARLSAEGGI VQGQVIGYNK GGLLVQFNRI RGFVPASQVA QLHGRTAAEE RQQALQRMVG QTIPLKVIEV DRDRNRLVLS ERSATQEWRK AQKQRLLTEL QPGDILTGRV NQLTNFGAFI DLGGADGLAH ISELSWQRVN HPREVLSPGQ EVRVMVVEID AERERIGLSL RRLQPNPWDT IDQRYSLGQL VSGPVTNVAP FGAFVQIEEA VEGLIHASEL DADPQAQPRD LLQPGQIITA RIISLDKQRQ RMGLSLRRNS ADEPPPEETP VEAPSTDM
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