| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0805 |
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| Symbol | |
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| ID | 5538271 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 1051336 |
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| End bp | 1057821 |
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| Gene Length | 6486 bp |
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| Protein Length | 2161 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640892957 |
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| Product | multi-sensor signal transduction histidine kinase |
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| Protein accession | YP_001430940 |
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| Protein GI | 156740811 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5002] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.354922 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGCCA CAACTGTTAC GTCACCGCAC GTTCGCGCAT GGGAGATTCT AACAGGACTG
GCGGAATATG GCCGGTCTGT CAGTGGTGAT GCGCAGTCAC TGGCGCAGCG CATCGTTGAC
CTGGCGCAGG AGTGCCTGCC CTGCCCCTGG GGCGTGATCG CGTTGCAGTT TGAAGGTGCG
ACGATCAGCG CCGGTTGGGG TGTCGGCGCG GAATGGCGTC AGCGCCTGAT TGAGCGCGCC
ATTCCTGTTC CCGATCAGAC GATCGAACTG CCGCTCTACA TTCGTGATGA ACCTGCGGGC
ATGGTGTGGC TTGGCATACC GGCTGCTCAT CATGAACAAC TCACTCCTGG CTTTCTGACC
ACACTGCGCC ATCAGATCGA ACTGCTGATC GCGCTGCTGG ATCGTGAAGT CGCATCAGTC
CCCACGACTG AAACGGCAGA ATCCTCGCGC GAACAACGGT ATGCCGACGA AATCGATACG
TTGCGCGCGG TGAGTGTTCA TCTGGGGTCC GGGCTTGCGT CCCATGAACT TCCTCGCGCA
GTCGTCCGAT GGGCGCAACA ACTCGTCCCC TGCACGACGG TACTTCTCAG TCTGTTCAAT
CTCGAAACCG GACTGCTCGA ACCGGTTGCG TCCCTCGGCG CTCCATTGGA ATCTCCGGCG
CCGATCGTAT CGAATGACCA TCAGATGTTG AGTGAATGGG TTGCCCGTCA TCGGCGCACT
ATTCGTCTTT CCGATATTCG CTACGCTCCT ATCTTGCCTG CGGTCGTCGC TTTTGCCGAT
GGACGTCCAA TCGGCGCATA TATGGCAACC CCGTTGCAGG TGGGGAATCA GGTGGTTGGC
GTCCTTGAGT TGATGGACGT TCAACCTGAT CGACTCGGCG AACACGAGGA ACGTTTGATC
GCCATCCTCG CAGCGCAGGC GGCGCAGTCT ATCGCCAGTG CCCAGCGTTA TGCCGAGGAC
GATGAACATC TTCAGGGTCG TCTGCTGCAA TTGCGGTCAT TGCAACGGAT CAGTCGCGAA
CTGACCTCAA CGCTTTATCT CCATAACATC CTCGATTTTG CGCTGAAAGA AGCGCTGCGC
GCCACGCGCG CAACGCAGGG GTATGTGGCG TTGCGCGGCT ATGTGGTGGA GCGTGAAGCA
TTTGAGATGG AGCAGTCCGA TGCGCTTGGT GTCGCGGTTT CTCCACAGAC CTATGTTACG
CTGCGCTCCG TCGGCGAGAA TGGACCGGTG CGCCTGATTG TCGCTGAAGG ATATGCTCCT
GATGATGATC ATCAGTTGAT TAATACGATC CTGGACGAGC GACGCACGGT TGCTGCGGAG
GTGATAGCGC GCGGTGAGGC GCGGATCGTC GATCAACTTA TGGATGATGA TCGACCGGCG
GCGGTTGGTC CATTGCCTGC CGCGACGCTG GCAGCGCCGA TCTATTATGA AGAGCGAGTC
ATTGGCGTTA TCAATCTGCA CAGTTCACGG ACGCGCGCCT TCAATCGCGA TGCGCTCGAT
TTCATCCGCG CAGTCGCCGA TCAGATCGCA CTTGCCATCG GCAACGAAGA GCGGTACCAC
GAACAGCGTC GCCAGCGCGA TTTGCTGGCT CAGCGCGCGA CGACCCTCAA TGAAGTGTTG
CGCATCGGGC AGGAAATGCG CGCCGATCGC TCGCTCGACG ATGTGCTCGA ACAGATTGCG
TTCAGCGTCG CCGAAACGGC CCGCTTCCGC TCGGTTGCGT TCTATCTGAT CGATGCCGAT
GATGGCGCGA CGGCGTCGCT GGTCGCCGCT GCGGGGTTGC CGCTGTCCGA CATTGAGCGC
CTGCGCCGGC GTCATTTGCC GTTGTCGCTG CTCGCACAGT TGCTCGATCC CCGGTATCGC
ATCGGGCGCA GTTTTTTTGT GCCGGGTGTG CGTGTGCGGG AACTGATCGA TGGAGCGGAC
CTGCGCCTGC TCTCGCCGTT GGAAACGGAA GGATTGCGTA CAGCGGATGA ATGGCAGGTC
GATGATGTCC TGATCGTGCC GCTCTACCGG AGTAAGTCGC GTCTGGTCGG GATCATGGTC
GTGGATGAAC CGTATGACCG TCAACTCCCG ACCCCGCGCG CGGTCGAAAC GCTCGAAATA
TTTGCCGATC AAGCGGCGAT TGCTATCGAG AATGCCACGC TGCTGCGTGA AGCCCGATCA
CAGGCGGAAC AGATGGCGGC GCTCTATCGC GCCAGCGCAG CGATGGTTTC CTCGCTCGAT
CTCGACAGTT TGCTCGAACG TATTTATGAG GAAATCGAGG CGCACGTCGG GACTCCGTCG
TTCTGTTTTG TGGCGTCGTA CAATCCGCTT CGTGACGAGA TTTGTTTTGA GTTGTTCAAG
CGTGAAGGGG TGACCGCAGC GCATTTGCAC AAACGCACGA TTCCTCGCAG TGGGTTGAGC
GGTTGGGTGA TCGATCACGG CAGAATGCTC CACATCGAGG ATTATCTTGA AGCGCAGGAT
CGCCTGCCTG TGACGCCGGT CAATCTGGGA GAACCAATCC GTTCATGGGT TGGCATTCCG
CTGATGCGTC AAAATCAGAC CATTGGCGTC CTCTCGGTAC AGAGTTTCGA GCCGCACGCT
TTCGATGCGC GTGATGTGCA GTGGCTTTCG ACGGTCGCTA ACCAACTTGC GGTTGCGCTG
TCGAATGCGC AACTGTTTGC GGAACGCGGG CAACGTATCA ATGAACTGAA CCTGATCAAT
TATATCGGGC ACATTACCAG TTCGACATTT GATATTGAGC GGATGTTCGC TGGCGTCTAC
GAGGCGCTGG CCGGCTTCCT GCCGGTCGAT GCGTTCGTTG CGTGCGTGTA TGATTCCGCG
CGGGATCGGA TTGGTCAGAC CTTCATCGTA GCGCATGGAA CGCGCGTGTA TCAGCGCATC
GACCGCGCGC CGTCGCCTGG CGGATTGATT CGCCGCGTGA TAGATGCGCA TCAGCCGATG
TGTCTGGAAG ATGCGCATCG TGGGACGATT GACGTCGGTC TCGATGTCGT CTATCCCGGC
GACGCCGACC ATGCATGGGT GTCGAGCGTT GGCGTGCCGC TGGCAGCGGG TGATCACGAG
GTCGTTGGCG TCCTCGTGTT GCAGAGCGCG ACGCCGCGCG CCTATGGCGA CCGCGAGTTG
GCGTTCCTGA GCACGGTCGC CGTACAGGTG GCGCTTGGTG TGCAGAACAT TCGCCTGTTT
ACCGAAGCGC GCGACAGCGC GACAGCGTTG CAACGCAAGG TCGGTGAACT GTCGGCGCTG
CTGCGCGCCG CACAGGTGCT CAGTTCCTCG CTCAAACCGG ACGACGTGCT CCAATCGCTC
ATGGCGATTG TCGCCGAACA GTTGCAGGTT GATACCGTCG CCCTCTGGAA GATCGACACC
GATGGATTCC TCTCTCCGGC AGCCATGCAG GGCATTTCGC CCGATATGGC GCGCGTGTTG
CGCGTGCCAA TCGGCAGAGG GCTGACGGGG CGCGTCGCTG CGAGCGGGCG CCCGCTGGTG
GTGACGAATG TCGAGGAAGA TGGCACGTCG CTCTATCCGC AGTTCAACCG CGAGCATCAG
TACACCTCGT TTATGGGTGT TCCCGTCGCC TACCGCGAAC AGACGATCGG GGTCTTGAGC
GTTATGACCG TGTCGCAGCG GTCTTTCAGC GACGACGAGG TGACCTTGCT GGCGGGGATT
GCCGATCAGG CGGCGATTGC GCTCGAAAAT GCGCGATTGT TCGCCGAGCG TGAGCGGCGG
ATTGCCGAAT TGACCGCGTT GAACCATATC AGTCAGGCGA TCAATGTCTC GCTCAGCACT
GCGGAAATCC TGGAAGCGCT GCACCGCGGC ATGAGCGAAG TGCTCGATAC GTCGCAATCG
TTCATTGCGT TGTACGACGC AAAAACGCGC CGCCTGACGT TCCCGCTGGT CTATGAGGAT
GGCCGCCGTG CGCCCGATAG AGAAACTGAG GTGATAGTCC TTGATGATCT GGCGGGCGGA
TTAACGCCGA CGGTGATTCT CGAACGGCGA CCGCTGCTGT TGCGCACCCG GCAGGAGGTC
GAGGCGATTG CGCTGCGTCC ATGCGACCCT GATGATCCGC CGATCTGTTC CTGGCTGGGC
GCGCCGATCA TTCAGGGCGA TGAGGTTTTC GGCGTTCTAA ATGTCCAGAG CTATGAGCCG
GGCAGGTTTG ATGAAGATGC GCAACGCTTT TTGATGACCG TCGCCAATCA GGCCGCCATT
GCGTTGAGCA ATGTCCGTCT GTTCCAGAGC GAGCAGGAGC GCCGTCGGGT GGCGGATACG
TTGCGCGAAG TTGCGCACAT GATGACTGGC GTGCTGGCGC TCGACGAAAT CTTCGCCATG
ATCCTCGATC AGTTGGCGCG GATTGTTCCT TACGATACGG CCTCGCTCAT GCTGCGCGAG
GGGGATATGC TGCGTATCGT GGCGGCGCGT GGTTTTGATG AGTCGATCCG GGAGCGTGTC
GAGCATCTCG AACTGCACGT TGATGATGAT CCGTCACTGG CACAGGTGCT GTACACTCGT
CGTCCACTGG TGCTGATCGA TGCGCGGGAA GCGCCGCCGT CCAATGTGGA TGACGGCACT
GAACATATCC GTGGTTGGGT GGGTGCGCCA TTGCTGCTCG GCGATGAGGT GATCGGCATC
CTCAACGTCG ATAGCGCCAC TGTCGGCGCG TATGATGAAG AGGATGCCCA ACTCGTCCTC
GCGCTGGCAA GCCAGGCGGC GCAGGCGATC CGCAATGCGC GCCTGTTCGC CGAGGTGCGC
CGTTTCAATA CGGAGCTTGA GCAGCTGGTC AATGAGCGCA CCGCAGAGTT GCAGGATGCA
TATGCCCGCC TTGCCGCCGA GCGCGATCGG TTGCAGGCGG TGCACGCAAT TACAGTGGAA
CTGACAGCCA GCCTCGACCT GCAAACGACG CTGAACCGTG CGCTGGAATT GGCGTCGAAG
GCGATTGGTG CGCGCCGCGG CTCGATTATG CTCAAGGACC TTAAGAACGG TCAACTCGAG
TGTCGCGCCG TGCTCAATGC CGATGGCTCG GTTGATTCGA AGCGTTTTAC CATCATGTTC
GAGCGCGGCG CCGGGCTGTC CGGGTGGGTG ATGCAACGGC AGGAGGCGGT CTGTATCGCC
GATGTGCGCG ATGATCCCCG CTGGCTGCAC GAAGAAGGAC GCGCCGAAGA GGTGCGTTCG
GTGATCGCTG CGCCACTAAT GACGCAGGAC AGTCCGCTCG GCGTCCTGAT CCTGACCAGT
CCCGAAGTCG ATTTTTTCAA CCAGGATCAA CTGCAACTGC TGGCAACGAT CGCCAACGAA
GTGGCAATCG TGATCAACAA TGCGACGCTC TATTCTATTA TCAACGACAT TGCCACCGAA
CGCGGCAATT TGTGGTCGCA GCAGCGCGAG GAGAATAGTA AAAATCAGGC GATCTTGCAA
AGCCTGGGCG AGGGCGTGAT CGTCGTGGAC GGAGATCAGA ACATTGTGCT CTACAATGCT
GCTGCCGAAC AGATTCTGGG CGTCCCGGCG CAATTTGTTG TCAAACAACC ACTGTCCCGG
ATCGCGGAAT ATTGTGCGGG CGATGGGGCG TCTGAGCGCG CTTGCCGCAT CTATGAGGGG
CTGCGCCAGG GATTGCAGGC GCTGACTGAG GCGCAAAAAA ACCATAACCG CATGCTCGAA
CTTCCGGAGC CGACGCAGTC GATTCTGCTG AACTTTGCGC CCTGGGTTGG TCCGCGGAAC
GCGATGTACG GCAGTGTAGT CGTGATCCAC GATATTACGC GCGAAGTCGA AGCCGATCGC
GCAAAGCGTG AATTTATCTC GAATGTCTCT CACGAACTGC GCACTCCGCT GACATCGATC
AAAGGGTATG TAGATTTGTT GATGCTTAAT CCTAAATGGA AGCTCAATGA GGAGCAGTTG
TCGTATCTGA GTGTGGTGAA GAGTAATACC CATCGGCTCA TGAACCTGAT CAACGATATT
CTGGAGATCG GGCGGATCGA TGATAACAAG GTCGGGTTGA CCTTCAAGCA TATCTCTATC
GGCGCTATCT TCGAGGAGGT TAACAAGACG CTGCGCGCTG AAATTGAGCG GAAGCGTTTG
TCGTTCAGCA TCGAAGTTGC CGACCATACG CCGCCGGTCA TGGCGGATGA GACGCGCCTG
ACACAGGTAG TGCTGAACCT GGCATCGAAT GCGGTGAAGT ATACCTATCC CGAAGGGTCG
GTCAAACTGC GCGCCGGACT GAATCCCGCC GGGTTGCTTC AGGTTGATGT GATCGATAAT
GGCGTGGGAA TTTCGCCCGA GCAGCAGCAG CACCTCTTCC GCCGCTTCTA CCGCGCCGAT
AATCCGCTTC GTGATGAGGC CGGCGGCACC GGTCTCGGGC TGTCGATCGC CAAATCGTAT
GTCGAAATGC ACGGCGGCCA GATGTGGGTC GAGAGTGAAC CGGGCAAGGG AAGTACGTTC
AGTTTCATTA TTCCGCTGAC CCAGCCAGAG TCGGAATCGG CGGCAACATC GCAGAGTCGG
TCATGA
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| Protein sequence | MDATTVTSPH VRAWEILTGL AEYGRSVSGD AQSLAQRIVD LAQECLPCPW GVIALQFEGA
TISAGWGVGA EWRQRLIERA IPVPDQTIEL PLYIRDEPAG MVWLGIPAAH HEQLTPGFLT
TLRHQIELLI ALLDREVASV PTTETAESSR EQRYADEIDT LRAVSVHLGS GLASHELPRA
VVRWAQQLVP CTTVLLSLFN LETGLLEPVA SLGAPLESPA PIVSNDHQML SEWVARHRRT
IRLSDIRYAP ILPAVVAFAD GRPIGAYMAT PLQVGNQVVG VLELMDVQPD RLGEHEERLI
AILAAQAAQS IASAQRYAED DEHLQGRLLQ LRSLQRISRE LTSTLYLHNI LDFALKEALR
ATRATQGYVA LRGYVVEREA FEMEQSDALG VAVSPQTYVT LRSVGENGPV RLIVAEGYAP
DDDHQLINTI LDERRTVAAE VIARGEARIV DQLMDDDRPA AVGPLPAATL AAPIYYEERV
IGVINLHSSR TRAFNRDALD FIRAVADQIA LAIGNEERYH EQRRQRDLLA QRATTLNEVL
RIGQEMRADR SLDDVLEQIA FSVAETARFR SVAFYLIDAD DGATASLVAA AGLPLSDIER
LRRRHLPLSL LAQLLDPRYR IGRSFFVPGV RVRELIDGAD LRLLSPLETE GLRTADEWQV
DDVLIVPLYR SKSRLVGIMV VDEPYDRQLP TPRAVETLEI FADQAAIAIE NATLLREARS
QAEQMAALYR ASAAMVSSLD LDSLLERIYE EIEAHVGTPS FCFVASYNPL RDEICFELFK
REGVTAAHLH KRTIPRSGLS GWVIDHGRML HIEDYLEAQD RLPVTPVNLG EPIRSWVGIP
LMRQNQTIGV LSVQSFEPHA FDARDVQWLS TVANQLAVAL SNAQLFAERG QRINELNLIN
YIGHITSSTF DIERMFAGVY EALAGFLPVD AFVACVYDSA RDRIGQTFIV AHGTRVYQRI
DRAPSPGGLI RRVIDAHQPM CLEDAHRGTI DVGLDVVYPG DADHAWVSSV GVPLAAGDHE
VVGVLVLQSA TPRAYGDREL AFLSTVAVQV ALGVQNIRLF TEARDSATAL QRKVGELSAL
LRAAQVLSSS LKPDDVLQSL MAIVAEQLQV DTVALWKIDT DGFLSPAAMQ GISPDMARVL
RVPIGRGLTG RVAASGRPLV VTNVEEDGTS LYPQFNREHQ YTSFMGVPVA YREQTIGVLS
VMTVSQRSFS DDEVTLLAGI ADQAAIALEN ARLFAERERR IAELTALNHI SQAINVSLST
AEILEALHRG MSEVLDTSQS FIALYDAKTR RLTFPLVYED GRRAPDRETE VIVLDDLAGG
LTPTVILERR PLLLRTRQEV EAIALRPCDP DDPPICSWLG APIIQGDEVF GVLNVQSYEP
GRFDEDAQRF LMTVANQAAI ALSNVRLFQS EQERRRVADT LREVAHMMTG VLALDEIFAM
ILDQLARIVP YDTASLMLRE GDMLRIVAAR GFDESIRERV EHLELHVDDD PSLAQVLYTR
RPLVLIDARE APPSNVDDGT EHIRGWVGAP LLLGDEVIGI LNVDSATVGA YDEEDAQLVL
ALASQAAQAI RNARLFAEVR RFNTELEQLV NERTAELQDA YARLAAERDR LQAVHAITVE
LTASLDLQTT LNRALELASK AIGARRGSIM LKDLKNGQLE CRAVLNADGS VDSKRFTIMF
ERGAGLSGWV MQRQEAVCIA DVRDDPRWLH EEGRAEEVRS VIAAPLMTQD SPLGVLILTS
PEVDFFNQDQ LQLLATIANE VAIVINNATL YSIINDIATE RGNLWSQQRE ENSKNQAILQ
SLGEGVIVVD GDQNIVLYNA AAEQILGVPA QFVVKQPLSR IAEYCAGDGA SERACRIYEG
LRQGLQALTE AQKNHNRMLE LPEPTQSILL NFAPWVGPRN AMYGSVVVIH DITREVEADR
AKREFISNVS HELRTPLTSI KGYVDLLMLN PKWKLNEEQL SYLSVVKSNT HRLMNLINDI
LEIGRIDDNK VGLTFKHISI GAIFEEVNKT LRAEIERKRL SFSIEVADHT PPVMADETRL
TQVVLNLASN AVKYTYPEGS VKLRAGLNPA GLLQVDVIDN GVGISPEQQQ HLFRRFYRAD
NPLRDEAGGT GLGLSIAKSY VEMHGGQMWV ESEPGKGSTF SFIIPLTQPE SESAATSQSR
S
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