| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0679 |
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| Symbol | |
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| ID | 5538144 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 887381 |
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| End bp | 889258 |
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| Gene Length | 1878 bp |
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| Protein Length | 625 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640892837 |
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| Product | hypothetical protein |
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| Protein accession | YP_001430821 |
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| Protein GI | 156740692 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5422] RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00239733 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00966173 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGCAGGC TTATTCCTGG ATCTATCACG CTTACCATCA TTGCGATGGC AGTCGCGCCG
ACATTTATCA ATGCCGCGCC GACTGCTCTG ATCAACGAGT TTATGCCGGC TCCGGCAAGC
GGAGCAGAAT GGGTCGAAAT CGTCAACTAT GGCGCTACGC CGCTCGACGT TGGTGGATGG
AAGATCGATG ACGACACACC CGGAGGTCCG CAAACCGTCA TCTCTTCTGG TGTTATCGTC
CCACCATACA GCCTGATTGT CATCACCTTG AACACACACA TGCTCAACAA CAGCGGATCG
GATGCTGTAA CACTGATTGA CACCTCAGGC GCTGTCATTG ACGTCGCCTC CTATACAGCG
GCGACGGTCG GCAAAAGTTT TGCGCGCATC CCGGACGGAA ACGGCGCCTG GGTAAAAACC
GAGCCATCGC CTGGCGAATG GAATGCGCCA CCTGGACCGG CGCCGACAGC AACACCTGAA
GCGACTGCCA CTCCCGAACC ATCACCCACC GACAACCCTT CATCAACCAC GAGTCCAACC
GACACACCGG CGCCGACCGA AACTCCCACC CCTTCCCTCA CCCACACCCC CTCCCCAACC
GACGAGGCAA ACGACACGCC GCAACCAACC GCCTCTCCTG AACCGACGCG CACGCCGTCC
CCGACCGACG AACCGACCAC CTCCCCCGAA CCGACCGCCT CTCCCCAACC GACCGCCTCC
CACACTTCTT CGCCAACCAA AACGCCATCC CCCACCCGTA CCCCTTCCCC AACTCGTACC
CCGTCCCCGA CCGACGAACC GACCGCCTCC CCCGAACCGA CCGCCTCCCA CACTTCTTCG
CCAACCAAAA CGCCATCCCC CACCCGTACC CCTTCCCCAA CTCGTACCCC GTCCCCGACC
GACGAACCGA CCGCCTCCCC TGAACCGACC GCCTCCCGCA CCCCCTCCCC GTCCAAAACC
CCCTCCCCCA CCCGTACCCC TTCCCCAACT CGTACCCCGT CCCCGACCGA CGAACCGACC
GCCTCCCCTG AACCGACCGC CTCCCGCACT CCCTCCCCGT CCAAAACCCC CTCCCCCACC
CGCACTCCTT CACCATCCCG CACCCCCACT CCGACCGACG AACCGACCAC CGCTCCCGAA
CCGACCGCCT CCCGCACCCC CTCCCCGTCC AAAACCCCCT CCCCCACCCG CACTCCTTCA
CCATCCCGCA CACCATCACC GATTAACGAA TCTGGTGCGA TGATTGAGCC AACGGCGACG
CGCACCCCCT CCCCGTCCAA GACCCCCTCC CCGTCCAAGA CCCCCTCCCC GTCCAAAACC
CCCTCCCCGT CCAAAACCCC CTCCCCGTCC AAGACCCCCT CGCCGTCCAA GACCCCCTCG
CCGTCCAAGA CCCCCTCGCC CACCCGTACT CCTTCACCAT CCCGCACTGT ACAGTCAGGA
GGCATTACAT CGGGTTCCGC ATCATCGCGC ACGATCACAC CATCATCCCG CGATGGAATG
GCAGGAGGGA GTGAGAGCGC CACTCCATCC ACTACCCGTC GTCCATATCA TCATGTGCCC
GCCTGGGCGG CGGAGGGATT GCCGACCATC GCTCCATTCG TTATTTCGGG ATCGCGTGAG
CCATACAGAG CGCTGCTCAC CCCGTCGGCC ACCGCTTCGG CGACCCAAAC ACCGACACCG
AAGCCGACAA GCATCGCTTC CACAGCCGCT CCATCATCGA CGCCGGGTTC TGTTTTCCCA
ATCGTCGCGG TTCGGATAAG CGCCGGTGTG CTCTTAATCG TCATTGCCGC ATGGCTTGCC
ATTCATTCGC TACGCCGCTC ACATACGCAT AACTGCAAGC AAGGCGCATC AGCCGCCGAA
TGGTTCTACG ACATATGA
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| Protein sequence | MRRLIPGSIT LTIIAMAVAP TFINAAPTAL INEFMPAPAS GAEWVEIVNY GATPLDVGGW
KIDDDTPGGP QTVISSGVIV PPYSLIVITL NTHMLNNSGS DAVTLIDTSG AVIDVASYTA
ATVGKSFARI PDGNGAWVKT EPSPGEWNAP PGPAPTATPE ATATPEPSPT DNPSSTTSPT
DTPAPTETPT PSLTHTPSPT DEANDTPQPT ASPEPTRTPS PTDEPTTSPE PTASPQPTAS
HTSSPTKTPS PTRTPSPTRT PSPTDEPTAS PEPTASHTSS PTKTPSPTRT PSPTRTPSPT
DEPTASPEPT ASRTPSPSKT PSPTRTPSPT RTPSPTDEPT ASPEPTASRT PSPSKTPSPT
RTPSPSRTPT PTDEPTTAPE PTASRTPSPS KTPSPTRTPS PSRTPSPINE SGAMIEPTAT
RTPSPSKTPS PSKTPSPSKT PSPSKTPSPS KTPSPSKTPS PSKTPSPTRT PSPSRTVQSG
GITSGSASSR TITPSSRDGM AGGSESATPS TTRRPYHHVP AWAAEGLPTI APFVISGSRE
PYRALLTPSA TASATQTPTP KPTSIASTAA PSSTPGSVFP IVAVRISAGV LLIVIAAWLA
IHSLRRSHTH NCKQGASAAE WFYDI
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