| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0580 |
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| Symbol | |
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| ID | 5538043 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 773254 |
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| End bp | 774213 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640892741 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001430727 |
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| Protein GI | 156740598 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4785] Lipoprotein NlpI, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.274085 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACAGC GGACAGGACG CTGTGTGGCA TGCATCGCGT TGGTGATAGT CCTCGCAGCG
TGTTCCGAAC CACTGGTCGA ACCGCGCGCG CCGCGCACGC CGACGGCGGT GATCGACCGC
TACAACGCAA TCGTGGCGAC CGCCGAGGCG GGCGATGATC TGCTGATGCG CGCCAGAGCC
TACTACGACC GAGGAAATAT CTGGTTTGAG CAGCAGAACT ACATCGAAGC CATCGCCGAC
TACGACCGGG CGCTTGCGCT CGACCCCTCG ATGTCGCGCG CCTTTCACAA CCGGGGGCTG
GCATATGCGC TGTTGAAAGA ATATGATGCC GCACTGCGCG ATTATGCCCA GGCGATCCAT
CTCGACCCAG CCTACCGTCG CGCCTACGAG AATCGGGTGC GGTTGCTGGA GGAACTCACT
GCGAGTACGC CGGACGAAAC ATTACTCCAG CAACTCGCCG ACGATTACGG CAGCCTGGCG
CGACTGATCC CGGAAGCCGA GGCGCCCTAT CGGTATCGGC AAGGGCTGAT CCTGGTGCGG
CTGAACGACC GCACTGCGGC GCGCGAGGCG TTCGACGCTG CTATTCGCGC CCGACCGCAG
CATGTCGATG CGCTCTACGA ACGCGCGCTG CTGCACTACG CTGTCGGTGA TCTCAACGCA
GCCCTCGCCG ACCTCGATAC CGCGCTGCGC CTGAGTCCGC GCGCCGCCAA CGCCTATTAC
GCGCGTGGCT TGATCCGCCA TACGCAGGGT GATCCCCGCA GCGCCATCGC CGATTTCGGG
CAGGCGCTGC TGCTTCGGCC AGACTACCCC GAAGCGCTGA TCGCCCGCGC GGCGACCTAC
GCGGAGCAGG GAAACATCAC TGCTGCGCGA GCGGACCTTA AGCGTCTCGA CGAACTACAA
CTCGATCCGG CGCTCCAGCC GGCGCGCGAG GCGCTGCGCA TTCGCATCAA TGCGCCTTAA
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| Protein sequence | MKQRTGRCVA CIALVIVLAA CSEPLVEPRA PRTPTAVIDR YNAIVATAEA GDDLLMRARA
YYDRGNIWFE QQNYIEAIAD YDRALALDPS MSRAFHNRGL AYALLKEYDA ALRDYAQAIH
LDPAYRRAYE NRVRLLEELT ASTPDETLLQ QLADDYGSLA RLIPEAEAPY RYRQGLILVR
LNDRTAAREA FDAAIRARPQ HVDALYERAL LHYAVGDLNA ALADLDTALR LSPRAANAYY
ARGLIRHTQG DPRSAIADFG QALLLRPDYP EALIARAATY AEQGNITAAR ADLKRLDELQ
LDPALQPARE ALRIRINAP
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