| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0552 |
|---|
| Symbol | |
|---|
| ID | 5538015 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 733329 |
|---|
| End bp | 734648 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640892714 |
|---|
| Product | RNA methyltransferase |
|---|
| Protein accession | YP_001430700 |
|---|
| Protein GI | 156740571 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGTGA CTTTGGCTGA TCTCTCCGAG CAAACGCTAT CGTCCACATG GCCCGACACC
CTGGAACTGA CGCTCGATGG CATCGCGCAG GGCGGTGAAG CAGTCGGACG CTGGCAGAAC
CGGGTAGTGT TCGCGGCTGG CGGCATTCCC GGCGAGCGGG TCGTGGTGCG ACTGCGGGAA
CGGCATGAGT CGTATGCGCG CGGCGATGTC ATCGACGTGC TGCTTGCCTC ACCCGACCGC
GTCGCTCCAC GTCTCCCCGG CGCGAGTCAT ATGCCCTGGC AACATATTGC ATTCGACGCG
CAACAACGCC TGCGCCGCCA GATTCTGGCC GATCAACTTG CCAAGTTTGC CGGCGTCGAT
CCGGCTGTGG TCGAAGCGAC AGCGTTTGCC TCAAAACCGT GGGAGTACCG CAATAACACC
CGTCTGCACT GCGACGGACG ACGGATCGGC TATTACGAGT CCAATACCCG CTCAATCGCA
GAACTCGATC ACGACCCACT GCTGCACCCG GTTTTGAATG AAGCGTTGGC AGCTCTGCGG
AGCGCACTTG CCGATGAACT TGATGATGCG CCGCCGCTCG AGGTGACGCT GCGTGTCAGC
GAGGCGTATG GGTACTGCAT CGCAGCGCTG CGCGGGCGCG GCGACCGCCG GAGTCTGGCG
GCGCGCTGGC GGGCGCGTTG TCCGGTTCTG GCAGGCGTCG TCTTTACCGT TCCGCCGCCG
CACATGCTGC CGCCGCTTGG CGCCGATACG CTCGTCGAGG AACTGGCAGA TCTGACGTTC
CTGCTTCGCC CGACGACCTT CTTTCAGGTG AATGTTGCAG CGGCGGCAAC TCTTCTCAAC
CTGATCCGCG CCGGCCTTGG CGATGAGGCG CGCGGTCGCC TGCTCGACCT CTACTGCGGC
GCGGGCGCGT TCACGCTCCC ACTGGCGCGC AATGCCATCG AGATAGTTGG CGTCGAGGAG
TATGCCGGCG CTGTCGCCGA TGCAGAGCGC AGCGCCGCAG TCAATCATAT CTCGAATGTG
CGCTTCATCA CCGGCAGCGC CGAAGCAGTG CTCGCCAACC TCGACGGACC GTTCGACGCC
GTGGTGCTCG ACCCGCCGCG TCGCGGGTGC CATCCGCGCG TGCTGCACGC CCTCATCGAG
CGCGCGCCGC GCCGGATCGT CTATGTCTCG TGTCATCCGG CGACCCTCGC GCGCGATCTG
AAGACCCTGA TCGCTGGCGG GTACGCGGTT GTGCGCGCGA CGCCGGTTGA CCTCTTCCCG
CAAACGCCGC ACATTGAGAG TGTGGTGGCG CTCATGCGCG CAGGGTCTGC GCAAGTGTAA
|
|---|
| Protein sequence | MSVTLADLSE QTLSSTWPDT LELTLDGIAQ GGEAVGRWQN RVVFAAGGIP GERVVVRLRE
RHESYARGDV IDVLLASPDR VAPRLPGASH MPWQHIAFDA QQRLRRQILA DQLAKFAGVD
PAVVEATAFA SKPWEYRNNT RLHCDGRRIG YYESNTRSIA ELDHDPLLHP VLNEALAALR
SALADELDDA PPLEVTLRVS EAYGYCIAAL RGRGDRRSLA ARWRARCPVL AGVVFTVPPP
HMLPPLGADT LVEELADLTF LLRPTTFFQV NVAAAATLLN LIRAGLGDEA RGRLLDLYCG
AGAFTLPLAR NAIEIVGVEE YAGAVADAER SAAVNHISNV RFITGSAEAV LANLDGPFDA
VVLDPPRRGC HPRVLHALIE RAPRRIVYVS CHPATLARDL KTLIAGGYAV VRATPVDLFP
QTPHIESVVA LMRAGSAQV
|
|---|
| |