| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0501 |
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| Symbol | |
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| ID | 5537964 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 646129 |
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| End bp | 647595 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640892663 |
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| Product | lipopolysaccharide biosynthesis protein |
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| Protein accession | YP_001430649 |
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| Protein GI | 156740520 |
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| COG category | [D] Cell cycle control, cell division, chromosome partitioning
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0489] ATPases involved in chromosome partitioning
[COG3944] Capsular polysaccharide biosynthesis protein |
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| TIGRFAM ID | [TIGR01007] capsular exopolysaccharide family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.056909 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGATACAC AATTTGTGCA TCGACTTGTG CGCAGGCAGT GGCGTCTGGT GATTGTGGGC
GGCGGTTTCG TCGGTGTATT GGCGCTCCTT GTCAGTGTAT TTCAATCGCC GATCTATCAG
GCGTCTACCA CCGTGTTAGT CAATCAGGGG CGAGGAACGG CAGCGCCCGA CTATGAGTCG
GTGCTGATGA GTCAGCAGTT GACGCGCACC TACGCTGAAC TCTTGAAGAA ACGACCCCTG
TATGAAATGG TCATCGCCAA CTTGCGGCTG GAAACGACGC CTGAACGTCT GATGCAGCAA
GTGCGGGTTT CCACCATCCG CGATACGCAA CTGATTGTGG TGACTGCGCG CGATCGTTCG
CCGCAGCGCG CCGCCGACAT TGCGAACGAA CTGGTGCGCC TCCTGCAAGA GCAGGATCGG
CAGTTGCTCA CCGGCTCATA TGGGAGCGGT GCGCGTGGTC TGAGCGTTGT TGAGCCTGCC
TGGGCTGATG CTGTTCCGGC AAGTCCAAAG ACACTGCGCG ATACGCTGCT CGGTCTGATC
TTCGGGTTGC TTGGTATGTC CGGCATTGCA CTGGTACGTG AGTATGTCGA TCAGACGATC
AAAAACGGCG ATGAAGCGGT CTGCGCAGTT GGCGCGCCTG TTCTGGCTGC CGTCAGCGCG
CGGTCGATCA ACAATGATGT GCGCCGCCGC TCGATTGGTG ATGGCGATGA CACGTCTGCC
GAAGACTATT GGATGCTGGC GGTGCGCACG CGAAGCGCCC TTGCCGATAA CCCGGCGCGC
TCGCTGACGA CAACGAGTGC GGAGCCGCTG GCAGACGCCT ACGCTGTTGC GGTACATCTG
GCTGCCATCT ATGCCCGGCT TGGGCAGCGG GTCATTCTGG TCGATGCCGA TCTGCGCCAT
CCGACACTCC ACTCCTGGTT CAATCTGTCG GGTGACACCG GTTTGCACGC GGCGCTGGCA
TGCACCCACT CTCTGCCGGT GTACCGGTAT TTGCAGCCGA CATCGGTTGC CAATCTGATG
CTGCTTCCGG CTGGCGAACC GGTTGCGAAT CCCCTGATCC TGTTCGACTC GCCTCGCCTG
CGCGAACGGA TCGGCGAGTT GTATCAGCAT GCCGATTTCA TCATCATTGC CGCTCCTGCG
CTGCTCAGCG CCGCCGAGTC GCTGCTGCTG GCACAGGCGG CGGATGCCGC GCTGCTCGTG
TTGCGCGCTG AAACGACGCC CCACGCTGCT GCCGCAGCCG CGCGCGCGCT CCTGGATCAG
GCGCGCATTC GGCTGCCGGG TATCGTGCTG ACCGGTGTTC CAGATCATGA CGCGGCTTCC
CGCATCGGCG CTTTCGTGTC TGTAATGTCG CGCCCGATGT TTGGGAAACG CCTGATCGAG
TCGCTGGCTG TTGCTGAGGA GAAATCATCT CGCAGCATAT CAATGTCGTC AGCGTCCACT
GCTTCGTCCC AATCCCCGAA ACAGTAA
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| Protein sequence | MDTQFVHRLV RRQWRLVIVG GGFVGVLALL VSVFQSPIYQ ASTTVLVNQG RGTAAPDYES
VLMSQQLTRT YAELLKKRPL YEMVIANLRL ETTPERLMQQ VRVSTIRDTQ LIVVTARDRS
PQRAADIANE LVRLLQEQDR QLLTGSYGSG ARGLSVVEPA WADAVPASPK TLRDTLLGLI
FGLLGMSGIA LVREYVDQTI KNGDEAVCAV GAPVLAAVSA RSINNDVRRR SIGDGDDTSA
EDYWMLAVRT RSALADNPAR SLTTTSAEPL ADAYAVAVHL AAIYARLGQR VILVDADLRH
PTLHSWFNLS GDTGLHAALA CTHSLPVYRY LQPTSVANLM LLPAGEPVAN PLILFDSPRL
RERIGELYQH ADFIIIAAPA LLSAAESLLL AQAADAALLV LRAETTPHAA AAAARALLDQ
ARIRLPGIVL TGVPDHDAAS RIGAFVSVMS RPMFGKRLIE SLAVAEEKSS RSISMSSAST
ASSQSPKQ
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