| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0452 |
|---|
| Symbol | |
|---|
| ID | 5537915 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 570937 |
|---|
| End bp | 572958 |
|---|
| Gene Length | 2022 bp |
|---|
| Protein Length | 673 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640892615 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001430601 |
|---|
| Protein GI | 156740472 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTATGA CGAAACGCAC ATCTCGTCCA ATCATCTCCC GCCGTCGCTT CCTTCAGGCG
TGTGCATGCA CGGTTGCAGC CGGGGCGCTT GGCGCAACGG GGTATGTCGT CGCCAACGCT
CCGCTTCCCC CACCGTATCC TGAATCATCG GTCTTTCAGA CGCCGGTTGC AGGTATACCG
ACGCCTGGCG CGCCTATCCT GTTGGTGACG AATCCAGGTG CGCAGCCGTC GTTTGGCGCG
TACCTTGGCG CTATTCTGCG CGCGGAAGGG TTCGTAGCGT TTCGGATGGC ACGCCTCGAT
GCGATCAATC CGGCGCTGCT GGCGCAGTTT CCGCTCGTGC TGCTGACAGT CGGTCCGTTG
ACCGCAGAAG CGTCCGATCT GTTCCGGGCA TATGTGCTGA ATGGCGGGCA TCTGATTGCA
TTTCGTCCCG ATCCGCGCCT CGCCGACCTC ATGGGTGTGC GCGCGCTCGG AGGTGATGTG
ACCGACGGAA TGCTGGCGGT CGCCGATCAT CTGCTCGCGC AGGGCATTAC CACCCAGGCG
CTTCAGGTTC ACACCCCGAT GGCGCAGTAT GAACTGGCGG GCGCTGAGGC GGTCGCCTGG
ATCGCCCGTC GTGACAGCAG CCGAACGTCC TACCCTGCTG TGACGCTGAT GCGCGCCAAA
AAAGGCATCG CTGCGCTGTG GGCATTCGAC CTGCCCCGTA ACATCGCCCT CATCCGCCAG
GGGAATCCGG CAGCGGCAAA CCAGGAGCGC GACGGGATGG AAGGCGTTCG GACGGTTGAT
CTGTTTGTGG ATTGGATCGA TCTTGATCGT ATTGACATTC CGCAGGCAGA CGAGCAGCAG
CGATTGCTCG CAAATATGAT CCATGCGCTG GCGGGTGAGG CGCCGCTGCC GCGCCTCTGG
CACCTGCCGG CTGGCGCTTC TGCGGTTCTG GTGGCAACCG GTGATGCGCA CGGACTGCTG
GCTTCCCATA TTGCTACGGC GCTGGAACTG GTCAGCCGGT ACGATGGCGC GCTGTCGATC
TACTATGCCC CGCCGCCGAT GAGCAACCGG TCGCGGACGC TGCGCCGGGT TCGTTGGTTG
GCTGAAGAAT TGCCGGTTGC CGGCGCGGTC TTCACCGACG ACGCAGGGTA CCCCACTCCG
AAAGATGTGG CGCGCTGGCG CGAAAGGGGA CACGGGTTCG GATTGCATCC CTACGTTGAA
CAGGGAGTGG GCAAGGGGTA TCACGAGTAC TGGAATACCT TCATCAAACT GGGGTATGGA
CCGGCTGAGC CAACCGTGCG CACCCATCGG GTGCTCTGGT CGGGGTGGGT CGAAACAGCG
CGGGTGCAGG CGCAGTATGG ACTACGCATG AGTCTCGACC ACTACCACAG TGGTCCGCTG
ATGCGTCGCG CAGACGGGCG CTGGGTTCAT GGGTACCTCA CGGGGAGCGG ACTGCCCATG
CCGTTCGTCG ATGAGCAAGG GAATCTGTTG CGAGTCTATC AGCAGCATAC GCACATTGTC
GATGAGCACC TGATGCGGGT GTTCGACACC GGCTACGAGA TGGGAGTGGA TGTCAATGAA
GCCATTGCCA TCGCGTGCCG GCAGATCGAT GCAGCGGTAG AGCAATATCC CTCGGCGCTT
GGATTACAGT GTCATATCGA CCCGTTTGCC TTTGGCGGCG AGAAGGCGGA GGCGGCGAGT
GTGTGGTTCG ACCGCGTGCT CGACCATGCG GCGTCGCGCG GGGTGATGAT TGTGTCGGCG
GAACAATGGC TGGCGTTCAC CGAGATGCGC GATCAGGCGG AGATGCGCAA CCTGATGTGG
AATGAGTCTG AGGGCGTGTT GATGTTCGAA GCGGTTATTA GTGCGGAGTC GCAGCGCGCG
CCGGCGCTTC TGCTGCCCCT GGAACACCGC AGGCGCATAC TGCGCCAGGT GACGATTGAT
AGCGTGCTGG CGAGCGCCGA GCAAAAGCGT GTGGGGGGAG TCGCCTACGG TGCGGTGGCG
CTGGCTGCCG GGAGGCGACA GGTGAGGGCA TATTATAGAT GA
|
|---|
| Protein sequence | MTMTKRTSRP IISRRRFLQA CACTVAAGAL GATGYVVANA PLPPPYPESS VFQTPVAGIP
TPGAPILLVT NPGAQPSFGA YLGAILRAEG FVAFRMARLD AINPALLAQF PLVLLTVGPL
TAEASDLFRA YVLNGGHLIA FRPDPRLADL MGVRALGGDV TDGMLAVADH LLAQGITTQA
LQVHTPMAQY ELAGAEAVAW IARRDSSRTS YPAVTLMRAK KGIAALWAFD LPRNIALIRQ
GNPAAANQER DGMEGVRTVD LFVDWIDLDR IDIPQADEQQ RLLANMIHAL AGEAPLPRLW
HLPAGASAVL VATGDAHGLL ASHIATALEL VSRYDGALSI YYAPPPMSNR SRTLRRVRWL
AEELPVAGAV FTDDAGYPTP KDVARWRERG HGFGLHPYVE QGVGKGYHEY WNTFIKLGYG
PAEPTVRTHR VLWSGWVETA RVQAQYGLRM SLDHYHSGPL MRRADGRWVH GYLTGSGLPM
PFVDEQGNLL RVYQQHTHIV DEHLMRVFDT GYEMGVDVNE AIAIACRQID AAVEQYPSAL
GLQCHIDPFA FGGEKAEAAS VWFDRVLDHA ASRGVMIVSA EQWLAFTEMR DQAEMRNLMW
NESEGVLMFE AVISAESQRA PALLLPLEHR RRILRQVTID SVLASAEQKR VGGVAYGAVA
LAAGRRQVRA YYR
|
|---|
| |